| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2472 |
|---|
| Symbol | |
|---|
| ID | 5083815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 2520212 |
|---|
| End bp | 2521912 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640484034 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001168665 |
|---|
| Protein GI | 146278506 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACA TCCTGATGCG GCCGGTTCTG GCTCTGGCGC TGGCGGCGCT TCTGCCGGTG
ACGGCGCAGG GACAGCAACA GGATGCGGGG GCCTATCTCG CCGCCCGCGT CGCCGCGGCC
AGCAGCGACT ATCGCGCCGC CTCCAACTGG TTCACGCGCG CCCTTGTGGC CGACCCCAAC
AACCAGAGCC TGATCGAAGG TGCGCTGATC TCGGACTTTT CGCTGGGCGA GCTGGGCAAG
GCCGTGCCCC TGGCCACGCG CCTCACCGAG GCGGGGGCAG GGTCGCAGGC GGCGGCTCTC
GTGCTGCTTG CGGACCGCGC GGGCCGCGGG GACTATCAGG CGATCCTCAC GGCGGACGCG
ACGGGGCTCG GTCCGCTCGT GGATCGGCTG GCTCTTGCCT GGGCGGCCTT CGGCGCGGGA
CGCATGTCCG AGGCGCTCGA AGCCTTCGAC CAGCTTGCGA CGGCGCAGGG GCTTCAGGCC
TTCGGCCTCT ATCACAAGGC ACTCGCGCTG GCCGCGGCGG GCGACTTCGA GGGCGCGGAC
GAGATCCTCT CGGGGCGCGA CGGCAATGCG CTGCGGGTCA TGCGCCGGGG CTCGATCGCC
CACGCGCAGA TCCTGAGCCA GCTCGACCGC AACGCCGATG CGGTGGCCAT GCTGAAACAG
AGCTTCGGGA CCGACGCCGA CGCCGGCATC GACGCGCTCG AGGCGCGCCT CCTGGCCGGT
GAGACCCTGC CTTACGACGT GGCGCGCAAC GCCACCGAAG GGATGGCCGA GATCTTCTTC
ACCCTTGCGG GCGCCCTCAG CGGCGAGGTG GATGACGGCT CGACCCTGCT CTATGCCCGC
ACTGCGACCT TCCTGCGGCC CGACCATACC GAGGCCCTGC TGCTCTCGGC GCAGATCCTC
GACAATCAGG GCCAGCACCA GCTCGCTTCC GAGACCTATG CGCGCATCCC CACCTCGGAC
CCGATGTTCT TCGTGGCCGA GATCGGCCGT GCCGAGGCGC TTCGGGCCGA TGGCAAGACC
GAGGCCTCGC TCGAGGTGCT GCAGGCGGTC GCGCGCAGCC GGTCGGATCT GATGCAGGTC
CATCTCGCAC TCGGCGATGC GCTGCGCCGC GAGGAACGCT ACGCCGATGC GGTGGCGGCC
TATGACGCCG CCATCGCCCG CGTCGCCGCG CCCGAGCGGC AGCACTGGCC GCTCTTCTAC
AGCCGCGGCA TCTGCCACGA GCGGCTGTCG CACTGGACCG AGGCGGAGGC CGACTTCCGC
AAGGCCCTCG CGCTCAACCC GGACGAGCCG CAGGTGCTGA ACTACCTCGG CTATTCCTTC
GTGGATCGGG GTGAGAACCT CGAGGAGGCG CTCTCGATGA TCGAGCGCGC CGTCGCCGCG
CGCCCCGAGA GCGGCTACAT CATCGACAGC CTCGCCTGGG CCTATTTCCG TCTTGGCCGC
TACCAGGATG CGGTCGAGCC GATGGAGAAG GCCTCGGTCC TGGAGCCGGT CGATCCGATC
GTCACCGACC ACCTCGGCGA TGTCTATTGG GCCGTCGGGC GCAAGCTCGA GGCCCGTTTC
CAGTGGCGCC GCGCGCTCTC CTTCGACCCG GAGGAAAAGG AGGCGCAACG CATCCGCCGC
AAGCTCGAGG TCGGCCTCGA TGCGCTGCTG GCGGAGGAAG GCGCAAAACC CTTGTCCGTA
GCCGTAAGAG CGAATGACTG A
|
|---|
| Protein sequence | MANILMRPVL ALALAALLPV TAQGQQQDAG AYLAARVAAA SSDYRAASNW FTRALVADPN
NQSLIEGALI SDFSLGELGK AVPLATRLTE AGAGSQAAAL VLLADRAGRG DYQAILTADA
TGLGPLVDRL ALAWAAFGAG RMSEALEAFD QLATAQGLQA FGLYHKALAL AAAGDFEGAD
EILSGRDGNA LRVMRRGSIA HAQILSQLDR NADAVAMLKQ SFGTDADAGI DALEARLLAG
ETLPYDVARN ATEGMAEIFF TLAGALSGEV DDGSTLLYAR TATFLRPDHT EALLLSAQIL
DNQGQHQLAS ETYARIPTSD PMFFVAEIGR AEALRADGKT EASLEVLQAV ARSRSDLMQV
HLALGDALRR EERYADAVAA YDAAIARVAA PERQHWPLFY SRGICHERLS HWTEAEADFR
KALALNPDEP QVLNYLGYSF VDRGENLEEA LSMIERAVAA RPESGYIIDS LAWAYFRLGR
YQDAVEPMEK ASVLEPVDPI VTDHLGDVYW AVGRKLEARF QWRRALSFDP EEKEAQRIRR
KLEVGLDALL AEEGAKPLSV AVRAND
|
|---|
| |