| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2297 |
|---|
| Symbol | |
|---|
| ID | 5083716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 2335728 |
|---|
| End bp | 2338598 |
|---|
| Gene Length | 2871 bp |
|---|
| Protein Length | 956 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640483860 |
|---|
| Product | glycine dehydrogenase |
|---|
| Protein accession | YP_001168491 |
|---|
| Protein GI | 146278332 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
|---|
| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.81309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCA CCCCCACCGA CTACAACGCC TACGATTTCG CCAACCGCCG GCACATCGGC
CCGTCGCCCT CCGAAATGGA GGAGATGCTG CGCGTGGTGG GGGTGTCCTC GCTCGACCAG
CTGATCGAGG AGACGGTGCC CGCCTCGATC CGGCAGGATC AGCCGCTCGA CTGGGCGCCG
CTGGCCGAGC ATGAACTTTT GCAGAAGATG CGCGAGGTGG CGGCGAAGAA CCGCGTGATG
GTCTCGCTGA TCGGGCAGGG CTATTACGGC ACCGTGACGC CGCCCGCGAT CCAGCGCAAC
ATCCTGGAAA ACCCGGCCTG GTACACGGCC TACACGCCCT ACCAGCCCGA GATTGCGCAA
GGGCGGCTCG AGGCGCTTCT GAACTATCAG ACCATGGTGG CGGACCTGAC CGGCCTGCCG
GTGGCGAACG CCTCGCTTCT GGACGAGGCG ACGGCGGCGG CCGAGGCCAT GACCATGGCC
GAGCGCGCCT CGAAGTCGAA GGCGCGGGCC TTCTTCGTCG ATGCCGACTG CCATCCCCAG
ACGATCGCCG TGATCCGCAC CCGGGCAGAG CCCCTGGGGA TCGAGGTCAT CGTGGGACAC
CCGGCGCAAC TGGTGCCCGA GGACGTGTTC GGCGCGCTCT TCCAGTATCC CGGCACCTAC
GGCCTCGTGC GCGACTTCAC CCGCGAGATC GCGGCGCTGC ACGAGGCGAA GGCGCTGGCG
ATCGTGGCGA CCGACCTTCT GGCGCTCTGC CTGCTGAAGG AGCCGGGCGC CATGGGCGCC
GACATCGCCA TCGGCTCGAG CCAGCGGTTC GGCGTGCCGA TGGGCTATGG CGGCCCGCAC
GCGGCCTTCA TGTCCTGCCG GGACGAGCTG AAACGTTCGA TGCCGGGGCG GCTGGTCGGC
GTCTCGGTCG ATGCGCGCGG CAACAAGGCC TATCGCCTCG CGCTCCAGAC GCGCGAGCAG
CACATCCGGC GCGAGAAGGC GACCTCGAAC GTCTGCACCG CGCAGGCGCT TCTGGCGGTG
ATGGCGAGCT TCTACGCCGT CTTCCACGGC CCCAAGGGCC TGCGCCACAT CGCCGAGCGG
GTGCATCTGA ACACCGTGCG GCTGGCTCAG GCGCTGAAGG AGGCCGGCGC CCGCGTCAGC
CCCGAGGCCT TCTTCGACAC GATCACCGTC GAGGTGGGGG TGGGGCAGGC GGGCATCCTG
GCCGCCGCGC GCCACCGTGG CATCAACCTG CGCAAGGTGG GCCGCGACCG GGTGGGCATC
TCGCTCGACG AGACGACCGA CGCAGGCGTG ATCGCCCGCG TGCTGGACGC CTTCGGCATC
CATGATCCCG CACCCGCGAG CGTGGGCCTC GGCTTCCCCG AGGCGATGCT GCGCGAGTCC
GCCTATCTGA GCCACCCGGT CTTTGACATG AACCGGGCCG AGTCCGAGAT GATGCGCTAC
ATGCGCCGCC TGTCGGACCG GGATCTGGCG CTCGACCGCG CGATGATCCC GCTGGGAAGC
TGCACGATGA AGCTGAACGC CGCGGCCGAG ATGATGCCGA TCACCTGGCC CGAGTTCGCC
ACCCTTCATC CCTTCGCGCC ACCCGAACAG GCGGCGGGCT ACACCGAGGC GATCCGCGAC
CTCAGCGACC GGCTCTGCCG CATCACCGGC TATGACGCCA TGTCGATGCA GCCGAACTCG
GGCGCGCAGG GGGAATATGC GGGGCTGCTC ACGATCCTCG CCTATCACCG CGCGCGGGGC
GAGGGGCAGC GCACCATCTG CCTCATCCCG ATGTCGGCGC ACGGGACGAA CCCGGCCTCG
GCGCAGATGG CGGGGATGAA GGTGGTCGTG GTCAAGTCGG CGCCGAACGG CGACGTCGAT
CTGGACGACT TCCGCGACAA GGCGGCGGCG GCGGGCGACC GGCTCGCGGC CTGCATGATC
ACCTATCCCT CGACCCACGG CGTCTTCGAA GAGACGGTGC GCGACGTCTG CCGCATCACC
CACGAGCACG GCGGGCAGGT CTATATCGAC GGCGCCAACA TGAACGCGAT GGTGGGCCTC
GTGCAGCCGG GCGCCATCGG CGGCGACGTG AGCCACCTGA ACCTGCACAA GACCTTTGCC
ATTCCGCATG GCGGCGGCGG TCCGGGCATG GGGCCGATCG GAGTGAAGGC GCATCTCGCG
CCCTACCTGC CGGGCCACCC GGAGACGGGC GGCCCCCTGG CCGGAGGCCA GATCGTGGCT
ACGCACGAGG GGCCGGTCTC GGCCGCGCCC TATGGCTCGG CCTCGATCCT GCTGATCTCC
TGGGCCTATT GCCTGATGAT GGGCGGCGAG GGGCTGACGC AGGCGACGCG GGTGGCGATC
CTGAACGCCA ACTATGTCGC GGCGCGGCTG AGGGGGGCCT ATGACGTGCT GTTCATGGGC
AACCGCGGGC GCGTGGCGCA TGAGTGCATC CTCGACACCC GCCCCTTCGC CGAGGCCGGC
GTGACGGTGG ACGACATTGC CAAGCGCCTG ATCGACAACG GCTTCCACGC CCCCACCATG
AGCTGGCCCG TGCCCGGCAC GCTGATGGTG GAGCCGACCG AATCCGAGAC CAAGGCCGAG
ATCGACCGCT TCATCACGGC GCTTCTCGCG ATCCGCGAGG AGATCCGGGC GGTCGAGGCG
GGCGAGATCG CGGCGGCCGA CAGCCCGCTG CGCCACGCGC CCCACACGGT TGAGGATCTG
GTCGCCGACT GGGATCGCAA CTATCCGCGC GAGCAGGGTT GCTTCCCGCC GGGCGCCTTC
CGGGTGGACA AGTACTGGCC GCCCGTCGGC CGGGTGGACA ATGCCTGGGG CGATCGCAAC
CTCGTCTGCA TCTGCCCGCC GGTCGAAAGC TACAGCATCG CGGCGCAATA G
|
|---|
| Protein sequence | MTFTPTDYNA YDFANRRHIG PSPSEMEEML RVVGVSSLDQ LIEETVPASI RQDQPLDWAP
LAEHELLQKM REVAAKNRVM VSLIGQGYYG TVTPPAIQRN ILENPAWYTA YTPYQPEIAQ
GRLEALLNYQ TMVADLTGLP VANASLLDEA TAAAEAMTMA ERASKSKARA FFVDADCHPQ
TIAVIRTRAE PLGIEVIVGH PAQLVPEDVF GALFQYPGTY GLVRDFTREI AALHEAKALA
IVATDLLALC LLKEPGAMGA DIAIGSSQRF GVPMGYGGPH AAFMSCRDEL KRSMPGRLVG
VSVDARGNKA YRLALQTREQ HIRREKATSN VCTAQALLAV MASFYAVFHG PKGLRHIAER
VHLNTVRLAQ ALKEAGARVS PEAFFDTITV EVGVGQAGIL AAARHRGINL RKVGRDRVGI
SLDETTDAGV IARVLDAFGI HDPAPASVGL GFPEAMLRES AYLSHPVFDM NRAESEMMRY
MRRLSDRDLA LDRAMIPLGS CTMKLNAAAE MMPITWPEFA TLHPFAPPEQ AAGYTEAIRD
LSDRLCRITG YDAMSMQPNS GAQGEYAGLL TILAYHRARG EGQRTICLIP MSAHGTNPAS
AQMAGMKVVV VKSAPNGDVD LDDFRDKAAA AGDRLAACMI TYPSTHGVFE ETVRDVCRIT
HEHGGQVYID GANMNAMVGL VQPGAIGGDV SHLNLHKTFA IPHGGGGPGM GPIGVKAHLA
PYLPGHPETG GPLAGGQIVA THEGPVSAAP YGSASILLIS WAYCLMMGGE GLTQATRVAI
LNANYVAARL RGAYDVLFMG NRGRVAHECI LDTRPFAEAG VTVDDIAKRL IDNGFHAPTM
SWPVPGTLMV EPTESETKAE IDRFITALLA IREEIRAVEA GEIAAADSPL RHAPHTVEDL
VADWDRNYPR EQGCFPPGAF RVDKYWPPVG RVDNAWGDRN LVCICPPVES YSIAAQ
|
|---|
| |