| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1987 |
|---|
| Symbol | |
|---|
| ID | 5082351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 2028043 |
|---|
| End bp | 2029566 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640483549 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001168183 |
|---|
| Protein GI | 146278024 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.173393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.464072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGT TCTCCGACCT CGCGCTGGAT CCCCGCGTGC TGAAGGCCGT GCAGGAAGCC
GGCTACGAAA CGCCCACCCC GATTCAGGCG CAGGCCATCC CGCATGCGCT GGAAGGCAAG
GATGTGCTGG GCATCGCCCA GACCGGCACC GGCAAGACCG CGAGCTTCAC GCTGCCGATG
ATCACCATTC TCGGCAAGGG TCGCGCCCGC GCCCGGATGC CGCGCAGCCT CGTGCTCTGC
CCGACCCGCG AACTGGCCGC CCAGGTGGCC GAGAATTTCG ACATCTACGC CAAGCATTCC
AAGCTCTCGA AGGCGCTGCT GATCGGCGGC GTCTCCTTCA CCGAGCAGGA CAAGCTGATC
GACCGCGGCG TGGACGTTCT GATCGCCACC CCCGGCCGCC TGCTGGACCA TTTCGAGCGC
GGCAAGCTTC TCCTGACCGG CGTGCAGATC ATGGTGGTGG ACGAGGCCGA CCGGATGCTC
GACATGGGCT TCATCCCGGA CATCGAGCGC ATCTTCTCGC TGACCCCCTT CACGCGCCAG
ACGCTCTTCT ACTCGGCCAC CATGGCGCCC GAGATCGAGC GGATCACCAA CACCTTCCTC
ACCGGCGCGG TGAAGATCGA GGTGGCGCGC CAGGCCACCA CCTCCGAGAC GATCGAGCAG
AAGCTCATCC AGATCACCCC CACCCGGAAA GAGCGCAGCT TTGCCGACAA GCGGGCCGTC
CTGCGCGCGT TGATCCGCGC CGAGGGCGAG GCCTGCACCA ACGCGATCAT CTTCTGCAAC
CGCAAGATGG ACGTGGATGT GGTGGCCAAG TCGCTGAAGC AGCACGGCTT CAACGCGTCT
CCGATCCATG GTGACCTCGA CCAGTCGCAG CGCACGAAGA CGCTCGACGG CTTCCGCGAC
GGGACGCTGC ACCTGCTGGT CGCCTCCGAC GTGGCGGCGC GGGGTCTCGA CATCCCGGCC
GTGAGCCATG TCTTCAACTT CGACCTGCCG ACGCACCCCG AGGATTACGT CCACCGCATC
GGGCGGACGG GACGCGCGGG CCGCAAGGGC AAGGCCTTCA GCATCGCGGT GCCGTCGGAC
GAAAAGTACC TTGCCGCCAT CGAGAGCCTC GTCAAGCAGG CGATCCCGCG CGGCGAGTTG
CCCGAGGGCT TCAGCCTCGA GGACCGTCCC GACCGGCCCG AGCGGGAAAG TGCGCGTGGC
GAGCGGCCCG GCCGCAGCCG CCGCGGCCGT GACCGCGAGC GGGACCGCCG CGAAGAGCCG
CGCGCGGAGG CCGTCGAGCC CGCCGTTGCA GAGGTGCCCG AGGTGCCGGT GCGCGAGGAG
CGTGCTCCCA AGCGGGACGA GCGCCGCGAG GACCGTGGCC GTCGGGACCG CGACCGCCGC
GACGAGCGCG TGGTCGGCAT GGGCGACCAT GTGCCGGATT TCCTGCTGCG CAGCTTCCGC
ATCGCGAGCC TCACGGCGCT GGACGAGGAA GAGCCGGCCG CGGACAGCGC GGACGAGGTT
CTCGCCGGTC AGGGCGAGGA CTGA
|
|---|
| Protein sequence | MTKFSDLALD PRVLKAVQEA GYETPTPIQA QAIPHALEGK DVLGIAQTGT GKTASFTLPM
ITILGKGRAR ARMPRSLVLC PTRELAAQVA ENFDIYAKHS KLSKALLIGG VSFTEQDKLI
DRGVDVLIAT PGRLLDHFER GKLLLTGVQI MVVDEADRML DMGFIPDIER IFSLTPFTRQ
TLFYSATMAP EIERITNTFL TGAVKIEVAR QATTSETIEQ KLIQITPTRK ERSFADKRAV
LRALIRAEGE ACTNAIIFCN RKMDVDVVAK SLKQHGFNAS PIHGDLDQSQ RTKTLDGFRD
GTLHLLVASD VAARGLDIPA VSHVFNFDLP THPEDYVHRI GRTGRAGRKG KAFSIAVPSD
EKYLAAIESL VKQAIPRGEL PEGFSLEDRP DRPERESARG ERPGRSRRGR DRERDRREEP
RAEAVEPAVA EVPEVPVREE RAPKRDERRE DRGRRDRDRR DERVVGMGDH VPDFLLRSFR
IASLTALDEE EPAADSADEV LAGQGED
|
|---|
| |