| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1208 |
|---|
| Symbol | glpD |
|---|
| ID | 5084492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 1249721 |
|---|
| End bp | 1251325 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640482766 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_001167414 |
|---|
| Protein GI | 146277255 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.397297 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCAAG GACGAGCCGG AGAGGATCCG GTGGATCTCT TCATCATCGG CGGCGGCATC
AACGGCTGCG GGATCGCCCG CGACGCCGCG GGCCGCGGGC TGAGCGTCAC GCTCGCCGAG
ATGGGCGATC TGGCACAGGC GACCTCCTCG GCCTCGACCA AGCTCTTCCA CGGCGGGCTG
CGCTATCTCG AATATTTCGA GTTCCGCCTC GTGCGCGAGG CGCTGGAAGA GCGCGAGACG
CTGCTCGTGG CCATGCCGCA TATATCCTGG CCGATGCGCT TCGTCCTGCC CTGGCAGCCC
GAGATGCGCT TTGCCGGCGA CACGCCCACC GCGCGGCTGC TCGGCCGGCT GATGCCCTGG
ACCCGCGGAC GCCGCCCGGC CTGGCTGATC CGCCTTGCGC TCGAGACCTA CGACCGGCTT
GGCGGGCGCA GGATCCTGCC CCCGGCCCGG CCCGTCGATC TGACGCGCGA CCCGGCCGGC
GCGCCGCTGC AACCGCGCTT CACACGGGGC TGGGAATATT CCGACTGCTG GGTGGAGGAC
TCGCGCCTCG TGGTTCTGAA CGCCCGCGAT GCCGAGAACC GCGGCGCCAC GATCCTCACC
CGGACCCGCG TGGTGGCCGC CGAGCGGCTG GGCGACGTGT GGCGCGTCAC CACCGAGGGC
GCCGAGGGGC GGCGCCAGCA TGTCGCCCGC GCGCTCGTCA ATGCCGGCGG CCCGTGGGTC
GCGCGCATCA TCCGCGAGAC CCTGTCGCTG CCCTCGACCG AGGGGGTGCG CCTTGTCCGC
GGCAGCCATA TCGTGACGCG GCGGCTGTTC GACCACGACC GCTGCTATTT CTTTCAGGGC
AAGGACGGGC GGATCATCTT CGCCATCCCC TACGAGACCG ATTTCACCCT GATCGGCACG
ACCGATCAGG ATCATCACGG CGCCCCCGAC GAGGCGCGCT GCACCCCCGA GGAGCAGGAC
TATCTCTGCG CCTTCGCCTC GGACTACTTC CGCCAGCCGG TCACGCGCGC GGACATCGTC
TGGACCTATT CCGGCGTCCG CCCCCTTTAT GATGACGGGG CGCAGTCGGC CACGGCCGCC
ACGCGCGACT ATGTCCTGTC GCTGGATAGG CAGGGGCCTC CGCTTCTCAG CGTCTTCGGC
GGCAAGATCA CCACCTACCG GCGGCTGGCC GAAAGCGCGA TGGCGCGGCT TGCGCCGCAC
TTTCCGCAGG CCCGCGGCCC CTGGACCGCC CGCGTCGCCC TGCCGGGCGG GGATTTTCCC
TGGGACGGCG CCCCGGCGCT GGCCGAAGGG CTGCGGCGCG ACCTTCCCTT CCTTGGCGAG
CGTTGGGCGC TCCGGCTGGT GCGGGCCTAC GGGACGGACG CGCGAAATCT GCTCGGTTCT
GCGCGCAACG CGCTTGATCT GGGGCGGGAG TTCGGTGCTA CGCTCACCGA GGCCGAGGTG
CGCTGGCTGA TGCGGCACGA ATATGCCCGG CGGGCCGAGG ATGTCGTCTG GCGGCGGAGC
AAGCTCGGCC TGCGGATGAC GGCCGGGGAG ATCGCGGCGC TGGACGACTG GATGCGGCAG
GCCGCGGGCG AGAACAGGGC GGCCGGGATG GCCGGCACAG GCTGA
|
|---|
| Protein sequence | MAQGRAGEDP VDLFIIGGGI NGCGIARDAA GRGLSVTLAE MGDLAQATSS ASTKLFHGGL
RYLEYFEFRL VREALEERET LLVAMPHISW PMRFVLPWQP EMRFAGDTPT ARLLGRLMPW
TRGRRPAWLI RLALETYDRL GGRRILPPAR PVDLTRDPAG APLQPRFTRG WEYSDCWVED
SRLVVLNARD AENRGATILT RTRVVAAERL GDVWRVTTEG AEGRRQHVAR ALVNAGGPWV
ARIIRETLSL PSTEGVRLVR GSHIVTRRLF DHDRCYFFQG KDGRIIFAIP YETDFTLIGT
TDQDHHGAPD EARCTPEEQD YLCAFASDYF RQPVTRADIV WTYSGVRPLY DDGAQSATAA
TRDYVLSLDR QGPPLLSVFG GKITTYRRLA ESAMARLAPH FPQARGPWTA RVALPGGDFP
WDGAPALAEG LRRDLPFLGE RWALRLVRAY GTDARNLLGS ARNALDLGRE FGATLTEAEV
RWLMRHEYAR RAEDVVWRRS KLGLRMTAGE IAALDDWMRQ AAGENRAAGM AGTG
|
|---|
| |