Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_0452 |
Symbol | |
ID | 5082251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | + |
Start bp | 448381 |
End bp | 448995 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640482005 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_001166663 |
Protein GI | 146276504 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0428943 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAAT TGATCGGTGC TGTCGGCGCG GCGGTCCTGG GTCTTGGCCT GGCTGTGGTG CCCGTCGAGG TGCATGCCGA AGGGCAGACT CTTCAGCGAT CGACGATGAA CCGGGCCGGT ATCTTCAAGT CACAGACGAG GCTTCTCGAC GGCCGTCTCT CGCAGCAATA CGAGGGCTCG GTCCGGCTGA AGCCCAAGGT CGAGCCGATT CCGGCGGCCC TGCCTGCGGT CCGCTACAGC GGGCGCTACA AGGGCGAGTA TCTCGAGGTT GCCAAGACGC TCGCGCGGAA GCATGGCGTG CCCGAACAGC TGTTCCTGCG GCTGGTTCAG CAGGAATCGG GCTGGAACCC GGGTGCGGTT TCGGTGAAGG GCGCCACGGG GCTGGCGCAG CTCATGCCGG GCACGGCGCA GCTCCTCCGC GTGGACATCA ACGATCCGCA TCAGAATCTC GAGGGTGGCG CGCGCTACCT CAAGATGATG TTTGACAAGT TCGGAACCTG GCAGCTTGCG CTCGCCGCCT ACAACGCCGG GCCGAAGGCG GTTGAAAAGC ACTCGGGCAT CCCGCCCTAC CGGGAGACGC AGAATTACGT CAAGGTCATC TTGGGCAACG GCTGA
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Protein sequence | MRQLIGAVGA AVLGLGLAVV PVEVHAEGQT LQRSTMNRAG IFKSQTRLLD GRLSQQYEGS VRLKPKVEPI PAALPAVRYS GRYKGEYLEV AKTLARKHGV PEQLFLRLVQ QESGWNPGAV SVKGATGLAQ LMPGTAQLLR VDINDPHQNL EGGARYLKMM FDKFGTWQLA LAAYNAGPKA VEKHSGIPPY RETQNYVKVI LGNG
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