| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3671 |
|---|
| Symbol | |
|---|
| ID | 3837127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 4217807 |
|---|
| End bp | 4220368 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637827795 |
|---|
| Product | bifunctional preprotein translocase subunit SecD/SecF |
|---|
| Protein accession | YP_428752 |
|---|
| Protein GI | 83595000 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0862684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTATT TTTCCAAAGC CAAGACGATC GCGATCATCG CGGTCTGTCT GATCGGCCTT
CTGCTTGCCC TGCCCAACGC CTTCAAGCAC GGCTCGCTGC CCGACTGGTT GCCGCAGAAC
CGCATCACCC TGGGCCTCGA CCTCCAGGGC GGCTCGCATC TGCTGCTTGC CGTCGATATG
CCGGCGGTCA TCCACGACCG ACTGGAAACC ATGCTTGAAA GCGTGCGCAC CAATCTGCGC
AAGGACTCGC TGCGCTATAC CGGTCTGGCG GTGCGCGACC GCTCGGTGGT TTTCACCCTG
GCCTCGGCTG ACGACATCGA AACCGCGCGC GGCGCCCTGG CGCCGCTGGT CCAGCCCGAC
GAGCCGGGCA AGCCGGCCGA TTACGGCCTG ACCTTCGATG GCCTGACCGG GCGCATCGCC
CTGGCCGATT CGGGCGTTCA GGCCTGGGCC GACAAGGCCG CCCAACAGTC GATCGAAATC
GTCCGCCGCC GCATCGACGA GACCGGCGTC AACGAGCCGA TGATCGCCCG CCAGGGCGCC
GACCGCATCC TGGTCCAGCT TCCCGGCGTT TCCGATCCCG GCCGCATCAA GCGCCTGCTC
GGCCAGACCG CCAAGATGAC CTTCCATATG GTCGGCGACC GGGCCTTGGG CGATGGCAGC
GTTCCCGCCG GCTACCGGCT GCTGCCCTCG GCCGATCCCG CCCGTCCGGG CGAAAAGATC
CTGGTGTCGC GCAAGGTCGA GGTCGACGGC AGTCATCTGA CCGACGCCAA GCCCAGCTTC
GACCAGCAGA ACGGCCAGTG GGTGGTCAGC TTCTCCTTCG ACGGCCAGGG CGCCCGCCGC
TTCGCCGATG TCACCAAGAT GGCCGTCGGC AAGCCCTTCG CCATCGTGCT TGACGACAAG
GTGGTCAGCG CCCCGGTCAT CCGCGAGCCG ATCACCGGCG GACGCGGGCA GATTTCGGGC
AGCTTCACCG CCGCCAGCGC CAATGATCTG GCGGTGCTGC TGCGCGCCGG CGCCCTGCCG
GCCCCCCTGA CCGTGGTCGA GGAACGCACC GTCGGCCCCG ATCTCGGCGC CGATTCGATC
CGCGCCGGCA TGATCGCCAT CAGCGTCGGC TTCGTGCTGG TGGTCGCCTA TATGGGCATC
TTCTACGGCC TGTTCGGCTG GTTCGCCAAT GTCGCCCTGG TCTTCAATCT GGCGATCACC
CTTGGCGCCT TGTCGTTGAT GCAGGCCACC TTGACCCTGC CCGGCATCGC CGGCCTGCTG
CTGTCGCTGG GCATGGCGGT CGATGCCAAT ATCCTGATCA ACGAGCGCAT CCGCGAAGAG
GCCAAAAAGG GGCGGGGCGT CGCCGCGTCG ATGGAAACCG GCTTCAAGCG CGCCTTCGCC
ACCATCTTCG ATTCCAACAT CACCACCCTG ATCAAGATGG CGATCTTGTT CTCGATCGGC
GTCGGCACCA TCCGCGGCTT CGCCGTGACC ATCTCGCTGG GCATCATCGT CAGCATGTTC
ACCGCGATCA CCGTCACCCG CTTGCTGATG GTGATCTGGT TCCGCCGCAC CAAGCCCAAG
AGCCTGCCGA TGGCCAACCA TTTCCGGCTG GTTCCCGATC ACACCAAGAT CGCCTTCATG
CGCGGCCGCC TGCTTGGGCT GGGCGGATCG GTGGTGCTGT CGGTCGCCTC GGTGGTGCTG
TTCTTCCACC CCGGCCTGAA TTACGGCGTC GATTTCGCCG GCGGCACGGT GATGGAGGTG
CGCTCGCAGA ACGCCGTCGA TTTCCCGGCC TTGCGCACCG ATCTTCAGTC GCTGCCGATC
GGCCCGGTCC AGCTTCAGGC TTTTGGCTCG CCCAATGACG TGCTGATCCG CCTGGAACGC
CAGGAAGGCG GCGACGCCGC CCAGGCCGAG GTGGTCAAGC AGGTCCAGGG CATGCTGGAG
CGCGACTATG CCGGCAGCGA GATCCGCCGG GTCGACAGCG TCGGCGCCTC GGTCTCGGCC
GAGTTGTTCC AAGACGGCAT GATGGCCCTT GGTTTGGCCG CCATCGCCAT GCTGATCTAT
ATCTGGTTCC GCTTCGAATG GCAGTTCGGC GTCGGCGCCG TGGTCACCAT GCTGCTCGAC
GTGACCAAGA CGGTGGGCTT CTTCGCCATC ACCGGCATGC AGTTCAACCT AACGGCCATC
GCCGCCATCC TGACCATCAT GGGCTATTCG ATCAACGACA AGGTCGTGGT CTATGACCGG
GTGCGCGAGA ACCTGCGGCT GTACCGCACC ATGCCCCTGC GGCAGTTGAT CGACAAATCG
ATCAATGAAA CCCTGGGACG GACGGTGGGC ACCTCGCTTG CCACCTTCCT CGCCATCATC
CCGCTGGCCG TCTTCGGCGG CGAGGCCCTG CGCGAATTCG CCCTGGTGCT GCTGTTTGGC
GTGGTGCTGG CGACCAGTTC GTCGGTGTTC ATCGCCGCGC CGCTGCTTCT GCTGCTGGGC
GAGCACCGGC TGCGTCCGGG GCTGTCGGCC AAGGCGCTGG CCAAGACCGA GGGCGAGACC
GAGACCGATG ACACCGGCGA GGCGCCGACC CCGGCGCGGT GA
|
|---|
| Protein sequence | MLYFSKAKTI AIIAVCLIGL LLALPNAFKH GSLPDWLPQN RITLGLDLQG GSHLLLAVDM
PAVIHDRLET MLESVRTNLR KDSLRYTGLA VRDRSVVFTL ASADDIETAR GALAPLVQPD
EPGKPADYGL TFDGLTGRIA LADSGVQAWA DKAAQQSIEI VRRRIDETGV NEPMIARQGA
DRILVQLPGV SDPGRIKRLL GQTAKMTFHM VGDRALGDGS VPAGYRLLPS ADPARPGEKI
LVSRKVEVDG SHLTDAKPSF DQQNGQWVVS FSFDGQGARR FADVTKMAVG KPFAIVLDDK
VVSAPVIREP ITGGRGQISG SFTAASANDL AVLLRAGALP APLTVVEERT VGPDLGADSI
RAGMIAISVG FVLVVAYMGI FYGLFGWFAN VALVFNLAIT LGALSLMQAT LTLPGIAGLL
LSLGMAVDAN ILINERIREE AKKGRGVAAS METGFKRAFA TIFDSNITTL IKMAILFSIG
VGTIRGFAVT ISLGIIVSMF TAITVTRLLM VIWFRRTKPK SLPMANHFRL VPDHTKIAFM
RGRLLGLGGS VVLSVASVVL FFHPGLNYGV DFAGGTVMEV RSQNAVDFPA LRTDLQSLPI
GPVQLQAFGS PNDVLIRLER QEGGDAAQAE VVKQVQGMLE RDYAGSEIRR VDSVGASVSA
ELFQDGMMAL GLAAIAMLIY IWFRFEWQFG VGAVVTMLLD VTKTVGFFAI TGMQFNLTAI
AAILTIMGYS INDKVVVYDR VRENLRLYRT MPLRQLIDKS INETLGRTVG TSLATFLAII
PLAVFGGEAL REFALVLLFG VVLATSSSVF IAAPLLLLLG EHRLRPGLSA KALAKTEGET
ETDDTGEAPT PAR
|
|---|
| |