Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A3434 |
Symbol | |
ID | 3836886 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | - |
Start bp | 3952272 |
End bp | 3955835 |
Gene Length | 3564 bp |
Protein Length | 1187 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637827555 |
Product | UvrD/REP helicase |
Protein accession | YP_428515 |
Protein GI | 83594763 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGCC CGCCGTCGGA GCCCGCCCCC CTCCTCGCCG AGGCCGATCC CCTCGATCCG GCCAAGCCAC AGCGCCGCGC CGCCGATCCC CTGGCTTCGG CCTGGGTGGC GGCGAGCGCG GGCACGGGCA AGACCAAGGT GCTGACCGAT CGCGTGCTGC GCCTGCTGCT GGCCGGTACC CCGCCGCAGC GCCTGCTGTG CCTGACCTTC ACCAAGGCGG CGGCGGCGGA AATGGCCAAC CGGGTGTCGG CCGTGCTCGC CGGCTGGGCC ACCCTGCCCG AAGAGGCCTT GCGCGGCCGC CTTGCCAGTC TGCTGGGGAG CCTGCCCGAG GGCGAAGAGG CCATCGAAGC CCTAAGCGGC CGGGCGCGGC GGCTGTTCGC CCAGGTGCTG GATTGCCCGG GCGGCTTGCG CATCCAGACC ATCCATGGCT TTTGCCAAAC CCTGCTGCGC CGTTTCCCGC TGGAAGCCGG GGTGGCGCCG CATTTCGAGG TGCTCGACGA CCGCGAGGCC CAGGCCCTGC ACCAAAGCGC CCGCGACGCC GTGCTGCGGG CGGCGCGCCA AGCCGAGGAC GGCGAGGGCG GCGATCCGGC CCTGGCCGCC GCCCTGGCGG TGGTCACCGG CCATCTGTCG GAAAGCCGCT TCGACGAGGT GATGGCGGCC CTGGGCGGGC AGCGCGGCCG GCTGCTGGCC GCGCTCGACC ATTTTGGCGG CGCCGAAGCC TTGGGCAAGG CGATTCGCGA TAGCCTGGGG CTGGCGGCCG ACGATACCCC CGAAACCGTT CTGGCCGACG GCTGCGCCGA GGGCGCTTTC GATGGGCCGT CGTTACGCGC CGCCGCCGCC GCCCTGATCG CGGGCGGCAA GACCGATCAG GAACGCGGCC TGCGCATCGC CGCTTTTGTC AGCGAAACCG ATCCGGCGAT CCGAGAAGGG CTGTTTTGGA CCTATATCGG CGCCTTTTTG ACCAAAACCG ACGAAAAACC GGTCAAGACA CTGTGCACCA AGCCGGTGGA AAAGGCCCAT CCCGGGACCC TTGAGAGTCT GGAGGCCGAG CAACAGCGCA TCTGGACCCT GCGCGAGCGC CTGCGCGCCG CCACCACCGC CCAGGCCAGC GAGGCCTTGC TAACTTTGGT CGGGGCGATG CTGAAGGATT ACCAGCGGCG CAAGCGGGCC CTGGGGCGGA TGGATTACGA GGATCTGATC CTGGCGGCCC GCCGCCTGCT GGCCGGCGAT GGCGCGGCGG CCTGGGTGCT GTTCAAGCTC GACGGCGGCC TTGACCATCT GCTGGTCGAC GAGGCCCAGG ACACCAGCCC CGACCAATGG GCGATCGCCA GCGCCCTGGC CGGCGAGTTC TTCACCGACA GCGCCCGCTG GGATGGCACG CGCCCGCGCA CGGTTTTCGC CGTCGGCGAC CGCAAGCAGT CGATCTATGG CTTCCAAGGC GCCGATCCCA AGGCCTTCGA GGATATGCGC CGGCATTTTC ACGACGCGGT GAGCGACATC GGCGGCCACT TCGCCGAGGT GCCGCTTAAT ATCTCCTTCC GCTCGACCCG CGCCGTGCTC GAGGCCGTCA ACGCCGTGTT CGCCCGCCAA CCGGCCCGCG ACGGCGTGGC CCAGGACGAC GCCGACAGCG GTGTGGCCGA GGACATCACC CACCACGCCT TCCGCAAGGA CGCCGGCGGA CTGGTCGAGC TTTGGCCGGC GATGGAACCG GCCCCCCGGG TCGTCGGCGA TCCCTGGAAG CCGCCGGTCG AACGCATCGG CCTTGAATCC GCCCGCGCCC GGCTGGCCAA GCGCGTCGCC CAGCGCATCA AAACGATGAC GAGCGGCGGC GAACTGCTGG AAAGCCAGGG CCGGCCGATT CGTCCCGGTG ATATCCTGGT GCTGGTGCGC CGGCGCGGCG GCTTTGAAGA GGAGTTGGTC AGCGCCCTTA AAAGCGCCAA GGTCGAGGTG GCCGGCGTCG ATCGCATGAC CCTGACCGAT CAGCTCGCGG TCATGGATCT GATCGCCCTT GGCAAGGCGC TGCTGCTGCC CGAGGACGAT CTGACCCTGG CCAGCGTGCT CAAGGGGCCG CTGATCGGCC TGGACGAAGA CGCGCTGTTC ACCCTCGCCC GCGACCGTGG CCGCGACGAA CGCCTCTGGG ACCGCCTGCG CCCCCATGCC GGGGCCGAGA ACGCCTATGG CAAGGCGATG GAAATCATCG AGCCGCTGCG CGACCGCGCC GGCCGTCTCG CCCCCCATGA ATTCTACGCC CATGTCCTGG ATGGTCCGCT CAACGGTCGG CGGCTGCTGC TCGGCCGCCT TGGCCCGGAG GCCGAGGACC CGATCGACGA ATTCCTCGCC CTGACCCTCG CCCATGAACG CGTCGGTCCG CCCGCCCTGC AGGGTTTTTT GTCGTGGCTG GAAAAGGGCA CCGTCGAGAT CAAGCGCGAC CTTGACCAGG GCGCCCTTGA CGCGGTGCGG ATCATGACCG TTCACGGCTC CAAGGGTCTG CAGGCGCCGG TGGTCTTCCT GCCCGACACC CTGGCCAAAC CCACGGGCAA TGATCTGTTG CTGTGGACCG CCGACAAGGG CGTCGCCGAC GCCCTGCCGT TCTGGTGCCC AAGCAAGGCC GATCGCGGCG CCGCCATCGA GGCGATGATC GACGCCCTCA AGGTCGAGCG CGACCGCGAA TACCGCCGGC TGCTCTATGT GGCGATGACC CGGGCGGCCG ACCGGCTTTA CATCTGCGGC TGGGAGACCC TGAAGCGCCC GGCCGAGGAT TGCTGGTACG CCCTGATCCA CGATGCCCTC GCCGCCTCGG CCCAGACGGT CGAGGTGCCC TTGCTGGACG CGACCGGCGC CCTTAAGGAC ACCGAGGTTC TGCGCCTGAC CTGCCCCCAG GAAGGATCGC CGTCCCCCTC CGACTCCGCG GCCCCCGCCG ACGAGGAGGG CGAAGCCCCG GCCGCCTGGG CCGCCCTGCC GCCGCCGCTC GAACCGACTC CCAGCCGCCC CCTCGCCCCC TCCCATGTCG GCGACGAGGG CGCGGCGCGC TCGCCCCTGG ATGGCCGGGG CGATCCCAGG CGATTCCTGC GCGGCCGGCT GATCCACAAG CTGCTGCAGC TTCTGCCCGA ACTGCCCGAC GAGGACCGCG GCCCGGCGGC GCGGCGTTGG CTGTCGCGCC CGGCCTGGGC CCTGGAGGCC GAGGAAATCG GGGCTTTGAG CGCCGAGGTT CTGGCGGTGC TCGATGACCC GGCCTTTCGC GCCGTCTTCG CCCCGGGCTC GCGGGCCGAG GTGCCGCTGG TCGGGCTGGT GGGAAATCAC GTGGTCAGCG GTCAGGTCGA CCGGCTGGCG GTGACCGACG ACGAGGTTCT GATCGTCGAT TACAAGACCA ACCGCCCGCC GCCGCGCGCG GTGGATCTGG TCGACATCGC CTATATCCGC CAGATGGCGG CCTACCGCGC CCTGCTCGCC CAGGTCTTCC CAAGCCGCGT GGCGCGTTGT GTGCTGTTGT GGACCGATGG CCCCTTCGCC ATGGAGATTC CCGCCGAGCG TTTGGCCGAG GAAGCCCGGA AACTGGGTTG GTAA
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Protein sequence | MTRPPSEPAP LLAEADPLDP AKPQRRAADP LASAWVAASA GTGKTKVLTD RVLRLLLAGT PPQRLLCLTF TKAAAAEMAN RVSAVLAGWA TLPEEALRGR LASLLGSLPE GEEAIEALSG RARRLFAQVL DCPGGLRIQT IHGFCQTLLR RFPLEAGVAP HFEVLDDREA QALHQSARDA VLRAARQAED GEGGDPALAA ALAVVTGHLS ESRFDEVMAA LGGQRGRLLA ALDHFGGAEA LGKAIRDSLG LAADDTPETV LADGCAEGAF DGPSLRAAAA ALIAGGKTDQ ERGLRIAAFV SETDPAIREG LFWTYIGAFL TKTDEKPVKT LCTKPVEKAH PGTLESLEAE QQRIWTLRER LRAATTAQAS EALLTLVGAM LKDYQRRKRA LGRMDYEDLI LAARRLLAGD GAAAWVLFKL DGGLDHLLVD EAQDTSPDQW AIASALAGEF FTDSARWDGT RPRTVFAVGD RKQSIYGFQG ADPKAFEDMR RHFHDAVSDI GGHFAEVPLN ISFRSTRAVL EAVNAVFARQ PARDGVAQDD ADSGVAEDIT HHAFRKDAGG LVELWPAMEP APRVVGDPWK PPVERIGLES ARARLAKRVA QRIKTMTSGG ELLESQGRPI RPGDILVLVR RRGGFEEELV SALKSAKVEV AGVDRMTLTD QLAVMDLIAL GKALLLPEDD LTLASVLKGP LIGLDEDALF TLARDRGRDE RLWDRLRPHA GAENAYGKAM EIIEPLRDRA GRLAPHEFYA HVLDGPLNGR RLLLGRLGPE AEDPIDEFLA LTLAHERVGP PALQGFLSWL EKGTVEIKRD LDQGALDAVR IMTVHGSKGL QAPVVFLPDT LAKPTGNDLL LWTADKGVAD ALPFWCPSKA DRGAAIEAMI DALKVERDRE YRRLLYVAMT RAADRLYICG WETLKRPAED CWYALIHDAL AASAQTVEVP LLDATGALKD TEVLRLTCPQ EGSPSPSDSA APADEEGEAP AAWAALPPPL EPTPSRPLAP SHVGDEGAAR SPLDGRGDPR RFLRGRLIHK LLQLLPELPD EDRGPAARRW LSRPAWALEA EEIGALSAEV LAVLDDPAFR AVFAPGSRAE VPLVGLVGNH VVSGQVDRLA VTDDEVLIVD YKTNRPPPRA VDLVDIAYIR QMAAYRALLA QVFPSRVARC VLLWTDGPFA MEIPAERLAE EARKLGW
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