Gene Rru_A3434 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A3434 
Symbol 
ID3836886 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp3952272 
End bp3955835 
Gene Length3564 bp 
Protein Length1187 aa 
Translation table11 
GC content70% 
IMG OID637827555 
ProductUvrD/REP helicase 
Protein accessionYP_428515 
Protein GI83594763 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCGCC CGCCGTCGGA GCCCGCCCCC CTCCTCGCCG AGGCCGATCC CCTCGATCCG 
GCCAAGCCAC AGCGCCGCGC CGCCGATCCC CTGGCTTCGG CCTGGGTGGC GGCGAGCGCG
GGCACGGGCA AGACCAAGGT GCTGACCGAT CGCGTGCTGC GCCTGCTGCT GGCCGGTACC
CCGCCGCAGC GCCTGCTGTG CCTGACCTTC ACCAAGGCGG CGGCGGCGGA AATGGCCAAC
CGGGTGTCGG CCGTGCTCGC CGGCTGGGCC ACCCTGCCCG AAGAGGCCTT GCGCGGCCGC
CTTGCCAGTC TGCTGGGGAG CCTGCCCGAG GGCGAAGAGG CCATCGAAGC CCTAAGCGGC
CGGGCGCGGC GGCTGTTCGC CCAGGTGCTG GATTGCCCGG GCGGCTTGCG CATCCAGACC
ATCCATGGCT TTTGCCAAAC CCTGCTGCGC CGTTTCCCGC TGGAAGCCGG GGTGGCGCCG
CATTTCGAGG TGCTCGACGA CCGCGAGGCC CAGGCCCTGC ACCAAAGCGC CCGCGACGCC
GTGCTGCGGG CGGCGCGCCA AGCCGAGGAC GGCGAGGGCG GCGATCCGGC CCTGGCCGCC
GCCCTGGCGG TGGTCACCGG CCATCTGTCG GAAAGCCGCT TCGACGAGGT GATGGCGGCC
CTGGGCGGGC AGCGCGGCCG GCTGCTGGCC GCGCTCGACC ATTTTGGCGG CGCCGAAGCC
TTGGGCAAGG CGATTCGCGA TAGCCTGGGG CTGGCGGCCG ACGATACCCC CGAAACCGTT
CTGGCCGACG GCTGCGCCGA GGGCGCTTTC GATGGGCCGT CGTTACGCGC CGCCGCCGCC
GCCCTGATCG CGGGCGGCAA GACCGATCAG GAACGCGGCC TGCGCATCGC CGCTTTTGTC
AGCGAAACCG ATCCGGCGAT CCGAGAAGGG CTGTTTTGGA CCTATATCGG CGCCTTTTTG
ACCAAAACCG ACGAAAAACC GGTCAAGACA CTGTGCACCA AGCCGGTGGA AAAGGCCCAT
CCCGGGACCC TTGAGAGTCT GGAGGCCGAG CAACAGCGCA TCTGGACCCT GCGCGAGCGC
CTGCGCGCCG CCACCACCGC CCAGGCCAGC GAGGCCTTGC TAACTTTGGT CGGGGCGATG
CTGAAGGATT ACCAGCGGCG CAAGCGGGCC CTGGGGCGGA TGGATTACGA GGATCTGATC
CTGGCGGCCC GCCGCCTGCT GGCCGGCGAT GGCGCGGCGG CCTGGGTGCT GTTCAAGCTC
GACGGCGGCC TTGACCATCT GCTGGTCGAC GAGGCCCAGG ACACCAGCCC CGACCAATGG
GCGATCGCCA GCGCCCTGGC CGGCGAGTTC TTCACCGACA GCGCCCGCTG GGATGGCACG
CGCCCGCGCA CGGTTTTCGC CGTCGGCGAC CGCAAGCAGT CGATCTATGG CTTCCAAGGC
GCCGATCCCA AGGCCTTCGA GGATATGCGC CGGCATTTTC ACGACGCGGT GAGCGACATC
GGCGGCCACT TCGCCGAGGT GCCGCTTAAT ATCTCCTTCC GCTCGACCCG CGCCGTGCTC
GAGGCCGTCA ACGCCGTGTT CGCCCGCCAA CCGGCCCGCG ACGGCGTGGC CCAGGACGAC
GCCGACAGCG GTGTGGCCGA GGACATCACC CACCACGCCT TCCGCAAGGA CGCCGGCGGA
CTGGTCGAGC TTTGGCCGGC GATGGAACCG GCCCCCCGGG TCGTCGGCGA TCCCTGGAAG
CCGCCGGTCG AACGCATCGG CCTTGAATCC GCCCGCGCCC GGCTGGCCAA GCGCGTCGCC
CAGCGCATCA AAACGATGAC GAGCGGCGGC GAACTGCTGG AAAGCCAGGG CCGGCCGATT
CGTCCCGGTG ATATCCTGGT GCTGGTGCGC CGGCGCGGCG GCTTTGAAGA GGAGTTGGTC
AGCGCCCTTA AAAGCGCCAA GGTCGAGGTG GCCGGCGTCG ATCGCATGAC CCTGACCGAT
CAGCTCGCGG TCATGGATCT GATCGCCCTT GGCAAGGCGC TGCTGCTGCC CGAGGACGAT
CTGACCCTGG CCAGCGTGCT CAAGGGGCCG CTGATCGGCC TGGACGAAGA CGCGCTGTTC
ACCCTCGCCC GCGACCGTGG CCGCGACGAA CGCCTCTGGG ACCGCCTGCG CCCCCATGCC
GGGGCCGAGA ACGCCTATGG CAAGGCGATG GAAATCATCG AGCCGCTGCG CGACCGCGCC
GGCCGTCTCG CCCCCCATGA ATTCTACGCC CATGTCCTGG ATGGTCCGCT CAACGGTCGG
CGGCTGCTGC TCGGCCGCCT TGGCCCGGAG GCCGAGGACC CGATCGACGA ATTCCTCGCC
CTGACCCTCG CCCATGAACG CGTCGGTCCG CCCGCCCTGC AGGGTTTTTT GTCGTGGCTG
GAAAAGGGCA CCGTCGAGAT CAAGCGCGAC CTTGACCAGG GCGCCCTTGA CGCGGTGCGG
ATCATGACCG TTCACGGCTC CAAGGGTCTG CAGGCGCCGG TGGTCTTCCT GCCCGACACC
CTGGCCAAAC CCACGGGCAA TGATCTGTTG CTGTGGACCG CCGACAAGGG CGTCGCCGAC
GCCCTGCCGT TCTGGTGCCC AAGCAAGGCC GATCGCGGCG CCGCCATCGA GGCGATGATC
GACGCCCTCA AGGTCGAGCG CGACCGCGAA TACCGCCGGC TGCTCTATGT GGCGATGACC
CGGGCGGCCG ACCGGCTTTA CATCTGCGGC TGGGAGACCC TGAAGCGCCC GGCCGAGGAT
TGCTGGTACG CCCTGATCCA CGATGCCCTC GCCGCCTCGG CCCAGACGGT CGAGGTGCCC
TTGCTGGACG CGACCGGCGC CCTTAAGGAC ACCGAGGTTC TGCGCCTGAC CTGCCCCCAG
GAAGGATCGC CGTCCCCCTC CGACTCCGCG GCCCCCGCCG ACGAGGAGGG CGAAGCCCCG
GCCGCCTGGG CCGCCCTGCC GCCGCCGCTC GAACCGACTC CCAGCCGCCC CCTCGCCCCC
TCCCATGTCG GCGACGAGGG CGCGGCGCGC TCGCCCCTGG ATGGCCGGGG CGATCCCAGG
CGATTCCTGC GCGGCCGGCT GATCCACAAG CTGCTGCAGC TTCTGCCCGA ACTGCCCGAC
GAGGACCGCG GCCCGGCGGC GCGGCGTTGG CTGTCGCGCC CGGCCTGGGC CCTGGAGGCC
GAGGAAATCG GGGCTTTGAG CGCCGAGGTT CTGGCGGTGC TCGATGACCC GGCCTTTCGC
GCCGTCTTCG CCCCGGGCTC GCGGGCCGAG GTGCCGCTGG TCGGGCTGGT GGGAAATCAC
GTGGTCAGCG GTCAGGTCGA CCGGCTGGCG GTGACCGACG ACGAGGTTCT GATCGTCGAT
TACAAGACCA ACCGCCCGCC GCCGCGCGCG GTGGATCTGG TCGACATCGC CTATATCCGC
CAGATGGCGG CCTACCGCGC CCTGCTCGCC CAGGTCTTCC CAAGCCGCGT GGCGCGTTGT
GTGCTGTTGT GGACCGATGG CCCCTTCGCC ATGGAGATTC CCGCCGAGCG TTTGGCCGAG
GAAGCCCGGA AACTGGGTTG GTAA
 
Protein sequence
MTRPPSEPAP LLAEADPLDP AKPQRRAADP LASAWVAASA GTGKTKVLTD RVLRLLLAGT 
PPQRLLCLTF TKAAAAEMAN RVSAVLAGWA TLPEEALRGR LASLLGSLPE GEEAIEALSG
RARRLFAQVL DCPGGLRIQT IHGFCQTLLR RFPLEAGVAP HFEVLDDREA QALHQSARDA
VLRAARQAED GEGGDPALAA ALAVVTGHLS ESRFDEVMAA LGGQRGRLLA ALDHFGGAEA
LGKAIRDSLG LAADDTPETV LADGCAEGAF DGPSLRAAAA ALIAGGKTDQ ERGLRIAAFV
SETDPAIREG LFWTYIGAFL TKTDEKPVKT LCTKPVEKAH PGTLESLEAE QQRIWTLRER
LRAATTAQAS EALLTLVGAM LKDYQRRKRA LGRMDYEDLI LAARRLLAGD GAAAWVLFKL
DGGLDHLLVD EAQDTSPDQW AIASALAGEF FTDSARWDGT RPRTVFAVGD RKQSIYGFQG
ADPKAFEDMR RHFHDAVSDI GGHFAEVPLN ISFRSTRAVL EAVNAVFARQ PARDGVAQDD
ADSGVAEDIT HHAFRKDAGG LVELWPAMEP APRVVGDPWK PPVERIGLES ARARLAKRVA
QRIKTMTSGG ELLESQGRPI RPGDILVLVR RRGGFEEELV SALKSAKVEV AGVDRMTLTD
QLAVMDLIAL GKALLLPEDD LTLASVLKGP LIGLDEDALF TLARDRGRDE RLWDRLRPHA
GAENAYGKAM EIIEPLRDRA GRLAPHEFYA HVLDGPLNGR RLLLGRLGPE AEDPIDEFLA
LTLAHERVGP PALQGFLSWL EKGTVEIKRD LDQGALDAVR IMTVHGSKGL QAPVVFLPDT
LAKPTGNDLL LWTADKGVAD ALPFWCPSKA DRGAAIEAMI DALKVERDRE YRRLLYVAMT
RAADRLYICG WETLKRPAED CWYALIHDAL AASAQTVEVP LLDATGALKD TEVLRLTCPQ
EGSPSPSDSA APADEEGEAP AAWAALPPPL EPTPSRPLAP SHVGDEGAAR SPLDGRGDPR
RFLRGRLIHK LLQLLPELPD EDRGPAARRW LSRPAWALEA EEIGALSAEV LAVLDDPAFR
AVFAPGSRAE VPLVGLVGNH VVSGQVDRLA VTDDEVLIVD YKTNRPPPRA VDLVDIAYIR
QMAAYRALLA QVFPSRVARC VLLWTDGPFA MEIPAERLAE EARKLGW