Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A3117 |
Symbol | |
ID | 3836563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | - |
Start bp | 3595017 |
End bp | 3595646 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637827232 |
Product | polysaccharide export protein |
Protein accession | YP_428199 |
Protein GI | 83594447 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | [TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.222433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATACGCG CGTGCATTGT TCGGAGGCTT TCTCTTCTTT TCGTAGGGGT GGCGTTTCTT GGCGGCCTTG CGGCCTGTTC GGGTTTGGAT GCGCCGCCGG CGACCGGATT CGAGACGGGA GAGCGACCGG TCTATGTGGT CGGCCCCGGG GATTCGCTGG ATGTCTTCGT CTGGGGGCAG CCCGATCTGT CGCGCTCCAT CGTCGTTCGC CCCGACGGCC GCCTGACCCT GCCGCTGGTC ACCGATCTGG TCGCGGCGGG CAAAACGCCC TCTGAATTAT CGGCCGCGAT CACCGAGCAG CTGCAGACCT ACGTGCAAAA TCCGGTGGTT TCGGTGATGG TCGTCAATTT CGCCGGCCCC TTCGACAAAC AGGTCCGCGT CGTCGGCGAG GCCGCCACGC CCAAGGCCCT GCAATACCGC GACCGCATGA CCACTCTGGA CGCGATGATC GAAGTCGGCG GCTTGAAGCA GTTCGCCGCC GGAAACCGCG CCGTTCTGGT GCGCGGCCAG CCGCCCGAGG CCAAGTCCTA CCGCGTCCGT CTGGAAGATC TGATGAACGA CGGCGACATC ACCGCCAATG TGCCGTTGAT GCCCGGTGAC GTTCTGATCA TTCCGCAGAG CTGGTTCTAG
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Protein sequence | MIRACIVRRL SLLFVGVAFL GGLAACSGLD APPATGFETG ERPVYVVGPG DSLDVFVWGQ PDLSRSIVVR PDGRLTLPLV TDLVAAGKTP SELSAAITEQ LQTYVQNPVV SVMVVNFAGP FDKQVRVVGE AATPKALQYR DRMTTLDAMI EVGGLKQFAA GNRAVLVRGQ PPEAKSYRVR LEDLMNDGDI TANVPLMPGD VLIIPQSWF
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