| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A2406 |
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| Symbol | |
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| ID | 3835840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | + |
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| Start bp | 2802329 |
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| End bp | 2806234 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637826514 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_427493 |
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| Protein GI | 83593741 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCTT CGACGACAGA TGACGCGAGG CCGGACCTCC CCTCGGATCA GGCGGAGCGC
CATCCCGAGG GAGGGGCCGA TTTCGAGGCG ATTTTCAGGG CGCTTCCGGG CCCCCATCTG
ATTCTGGACG CGGACTTGAA GATCGCCGCC GTCAATGACG CCTACCTTCA GGCGACGCTG
ACCCGTCGCG GCGAGATCCT TGGCCGGGGC ATATTCGAGG TCTTTCCCGA CAACCCCAAT
GATCCGGTCA GCGAGGGCGT GCGCAATCTG CGGGCCTCGC TCCTGCGCGT CCTGTCAAGC
CGGACCCAGG ATGTGATGTC CATTCAGAAG TATGACGTGC GCAAGCCGGG CGGCGGGGCG
GGCGACTTCG AGCTGCGCTA TTGGAGTCCG ATCAATACCC CCGTGCTTGG CGCCGATGGC
GCGGTCGTCT ACATCGTTCA CTATGCCCAG GATCTAACCG AATACTATGC TTCCTCCGGG
CAACAGGATT TCGCCGAGGG CGGGAAGGAC GACATCGTCC GGCAGATGGA AGCGGAAATC
TTTCAGCGCT CCAAAGAAGT CGCCAAATCA AACCTGAAAT TGAAGGAAGC CAATTCAGAA
CTGGCGATCC TTTACGAAAA AACCCGCGAA CTCGATGATA TCAAAACCCA GTTCTTCGCC
AACGTCAGCC ACGAGCTGCG CACCCCGCTG ACCTTGATCC TCGGGCCGGT CACCAGCCGT
CAGGAGGACC CGACGCTCGC CCCGGCCGAA AAGCGGGTGC TTGATATGGT GGCGCGCAAT
GCCCGACTGC TGCTCCGCCA CGTCAACGAC CTGCTTGATA TCGCTAAACT CGAAGCCGGG
CAGATGCGGA TGCAATATGT CCGCACCGAT GTGACCCGGC TCTGCCGCTT CGCCCTGTCG
CACTTCGACT CGTTGGCCGA GGAACGGGCC ATCGCCTTCA CCCTGGAGGC GCCCGCCGTC
CTTTGGGCCG AGATCGATCC GGAAAAGTTC CGGCGGGTCC TGCTCAACCT TCTGTCCAAC
GCCTTCAAAT TCACCCCCAA CCAGGGGGAG ATCACCGTGT CGCTGATCGA TCGCGGCGAT
GATGTGATCT TGCGGGTGAG CGACAACGGG CCGGGGATTC CCGAAAGCAT GTGGACCGCC
GTGTTCGAGC GCTTCCGCCA AGTCGATGGC GGCAGCGACC GCCGCCATGG CGGAACCGGG
CTTGGTCTGG CCATCGTCAG GGAATTCGTC GATCTCCACG GCGGCGAGGT GAGCATCGGG
CAGGCCTCGG AAGGCGGGGC GGCGTTCACC GTCGTCCTGC CCAAAAAGGC CCCGCCCGAC
GTCGCGGTCT ATCCCGAAAT CGGCGACACC CTGGCCGAAG GCCCGGGGTT CTATCGTGAC
ATCGATAAGG GGCTTGAGGG CGAGGACCGC CTGACGGACC TCGCCCCGTC TGCCGCCGCC
AGCGGGCCCG CCAGCGGGCC CGCTGGCGGC GTCGGCATCA ACGCCCCGCT CGTTCTTGTC
GTGGAGGACA ACCCCGACAT GAACGCCTTT GTCAGCGAGA TCGTCGCTGG ACACTATCGG
GTGATCTCGG CCTTCGACGG CCAGGAGGGG CTGGAGAAGG CCCACGAAAC CCTGCCCGAT
CTGATCATCA GCGATGTCAT GATGCCAAGG ATGAGCGGCG AGACCATGGC CGACACCCTG
CGTCAGGATG GTCTGACCAG CGATATTCCG ATCATCATGC TCACCGCCAA AGCCGATGAG
GCCATGCGCG CGCGCATGCT GCGCGGCGTG GTGCAGGACT ATCTGTTCAA ACCGTTTTCC
CGCCTGGAAC TGCTGGCCCG CGCCGATGGG CTGATCGCCG ACCACCGCCG CAAGCAGATG
GTATTGCGCG AGAGCGAAGC CCGCTTCCGC GCCACCTTCG AACAAGCCGC CGTCGGCATC
GCCCATCTCG ATCCCGATGG CCATTGGCTG CGGGTGAACC ACAAGCTCTG CGATATCGTC
GGCTATCCCC CCGACGAGTT GCTCACGCTC AGCTTCCAAG ACATCACCCA TCCCGATGAC
CTGCGGGCCG ATCTTCGCCA GATGGAGGCC CTGCTCGCCG GCCAGATCGA CACCTATACC
ATCGAAAAGC GCTACATCCG CAAAACGGGG GAAAGCCTGT GGATCAACCT GACCGTCTCC
CTGGTGCGCG ACATCCATAA CGCCCCGGCC TATTTCATCT CGGTGGTCGA AAACATCCAA
AGCCGCAAGG AGGCCGAACT TCAGTTGCTG CTGGCCTCGG CGGTGTTTTC CAACAGCATG
GAGGGGATCT TCGTCACCGA CCTCAAAGGT TCGATCCTGG CGGTCAATCC GGCCTTCAGC
CAGATCACCC TCTATGAAGC CGCCGAGGTT CTGGGGCGCA ACGCCCGCAT CTTGCAATCG
GGTCGCCAAA ACCGCGAGTT CTATGTCGCC TTGTGGCAAG ACGTCCTGAC CATCGGATCC
TGGCGCGGGG AAATCTGGAA CCGCCGCCGC GATGGCGAGG TTTTCCCCGA ATGGCTCAGC
ATCAGCTCGG TGCGCAACCA TCAGGGCGAA GTCACCAATT ACATCGGCAT TTTCTCCGAT
CTGTCGCGGA TCAAGCATTC CGAAGCCAAA TTCCACCACC TCGCCCACCA CGATCCGCTA
ACCGGCCTGC CTAACCGCCT GCTGTTGCGC AGCCGCCTCG ATCACGCGAT CGAACGGGCG
CGGCGCACCG GCGGGCGGTG CGCCGTGTTG TTTCTCGACC TTGACCGCTT CAAGATGATC
AACGACAGCC TGGGTCACCG GGCAGGTGAT ACCTTGCTGC GCACCCTGGG GGCGCGCCTG
ACCGCCTGCC TGGGCGATAC CGGCACCCTC GCCCGCCTGG GCGGCGATGA ATTCGTCGCG
GTGATTGAAG ACATCGATGG CATCCCGGCC GTCGGCACGA TCGCCCTCAC CATGCTCGAG
CGCCTGCGCG AACCCTGCCG GTTGAGCGAA GGCCCCGAGG TTTGCATCGG CGGCAGCGTT
GGCATCAGCC TATTCCCCGA AGACGGCGAC AACCCCGATA CCTTGCTCCA ACATGCCGAT
ACCGCGCTGG GCCAGGTCAA AGGCGCCGGA GGGGGGGCTT ATGGATTTTA CACCCGGACC
TTGACCGAAC GGATCTCCGC CCGCCTTGGC CTGGAGGCCG GATTGCGCCA CGCCTTGGAA
CAGGGGGATT TTCTCCTCCA CTACCAACCC TTGATCGCGC TGGGGACCGG CGAGGTCGAA
GGGGTGGAGG CGCTGGTCCG CTGGGCGGGC GGCGACGGCC TGCTTATTCC CCCCGACCGC
TTTATTCCCC TGGCCGAAGA CACCGGGTTG ATCGTTCCCT TGGGCGAATG GGTGCTCGGG
GAAGCCTGCC GAACCATGCA GCGCTGGCGC AGCCAGGGCA TGCCCCTGAC GGTGCTGGCC
GTCAATCTGT CACCCCGCCA GTTCCGCGAC CACGCCATTC CCGCCCTGGT CCGCCGGGTC
CTTGAACAAA CCGGCTTGCC GGCCAGCGTC CTTGAGCTGG AAATCACCGA AAGCGCCATC
ATGGAACAAG GTGCCGCCGC CGAGGCCCAG ATGACCGGGC TTAAGCACTT GGGCGTGCGG
CTGGCGATCG ATGATTTCGG CACCGGCTAT TCGTCGCTGG CCAACCTCCG CCGCTTCCCC
ATCGATAAGA TCAAGATCGA CCAAAGCTTC GTGCGCGATA TCCCGCGCGA TGCCGCCGCC
GAAGAGATCA CCGCGACGAT CATCGCCATG GGGCGCACGC TCAAGCTCCA TGTCCTGGCC
GAAGGGGTGG AAACCACCGA TCAGCTTGAT TTCCTGTCGC GCAAGCAATG CGACAGCGCC
CAGGGCTATC TGTTCAGCCG GCCGATCACC GCCGCCGCCC TGGAAAAGTG GCTCGCCCTA
CGCTGA
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| Protein sequence | MIPSTTDDAR PDLPSDQAER HPEGGADFEA IFRALPGPHL ILDADLKIAA VNDAYLQATL
TRRGEILGRG IFEVFPDNPN DPVSEGVRNL RASLLRVLSS RTQDVMSIQK YDVRKPGGGA
GDFELRYWSP INTPVLGADG AVVYIVHYAQ DLTEYYASSG QQDFAEGGKD DIVRQMEAEI
FQRSKEVAKS NLKLKEANSE LAILYEKTRE LDDIKTQFFA NVSHELRTPL TLILGPVTSR
QEDPTLAPAE KRVLDMVARN ARLLLRHVND LLDIAKLEAG QMRMQYVRTD VTRLCRFALS
HFDSLAEERA IAFTLEAPAV LWAEIDPEKF RRVLLNLLSN AFKFTPNQGE ITVSLIDRGD
DVILRVSDNG PGIPESMWTA VFERFRQVDG GSDRRHGGTG LGLAIVREFV DLHGGEVSIG
QASEGGAAFT VVLPKKAPPD VAVYPEIGDT LAEGPGFYRD IDKGLEGEDR LTDLAPSAAA
SGPASGPAGG VGINAPLVLV VEDNPDMNAF VSEIVAGHYR VISAFDGQEG LEKAHETLPD
LIISDVMMPR MSGETMADTL RQDGLTSDIP IIMLTAKADE AMRARMLRGV VQDYLFKPFS
RLELLARADG LIADHRRKQM VLRESEARFR ATFEQAAVGI AHLDPDGHWL RVNHKLCDIV
GYPPDELLTL SFQDITHPDD LRADLRQMEA LLAGQIDTYT IEKRYIRKTG ESLWINLTVS
LVRDIHNAPA YFISVVENIQ SRKEAELQLL LASAVFSNSM EGIFVTDLKG SILAVNPAFS
QITLYEAAEV LGRNARILQS GRQNREFYVA LWQDVLTIGS WRGEIWNRRR DGEVFPEWLS
ISSVRNHQGE VTNYIGIFSD LSRIKHSEAK FHHLAHHDPL TGLPNRLLLR SRLDHAIERA
RRTGGRCAVL FLDLDRFKMI NDSLGHRAGD TLLRTLGARL TACLGDTGTL ARLGGDEFVA
VIEDIDGIPA VGTIALTMLE RLREPCRLSE GPEVCIGGSV GISLFPEDGD NPDTLLQHAD
TALGQVKGAG GGAYGFYTRT LTERISARLG LEAGLRHALE QGDFLLHYQP LIALGTGEVE
GVEALVRWAG GDGLLIPPDR FIPLAEDTGL IVPLGEWVLG EACRTMQRWR SQGMPLTVLA
VNLSPRQFRD HAIPALVRRV LEQTGLPASV LELEITESAI MEQGAAAEAQ MTGLKHLGVR
LAIDDFGTGY SSLANLRRFP IDKIKIDQSF VRDIPRDAAA EEITATIIAM GRTLKLHVLA
EGVETTDQLD FLSRKQCDSA QGYLFSRPIT AAALEKWLAL R
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