Gene Rru_A2008 details

Gene Information

• Locus tag: Rru_A2008
• ID: 3835433
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 2320063
• End bp: 2321928
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637826108
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_427095
• Protein GI: 83593343
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.578808
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGCGC CGTTTTTATC CTCCCTATCC CCCACCAGTC CGCTGGCCAG CGCCACGGCG 
CCCTTTCCCG GCTCGCGCAA GGTTTATGCC CGCCCGGCCG ACGCCCCCCA TTTGCGCGTG 
CCCTTTCGCG AGATCATCCT GTCCGACCCG GGCGAAGCCC CGGTGCGGGT GGCCGACCCT 
TCGGGCCCCT ATAGCGATCC CGAGGCGACG ATCGATCTGC GCCAGGGATT GGCCCGCCAT 
CGGGCGTCTT GGGCCAGCGC CCGGGGCAAT TCCACGGTCA CGGCCGGCCG CCCCGCCCCG 
AGTGAAGGCG ATTTCGAGGC CTTTCCCCTG ACCTACGCCC CCTTGCGCCG CCGCGATGAG 
ACCCCCTTCA CCCAACTGGA ATACGCCCGC GCCGGAGTGA TCACCGACGA GATGATCTAT 
GTGGCGACGC GGGAGAACCT GGGCCGGGAC AGCGCCGTGG CCGGGGCCTG CGCGCGGTTG 
GCGGGCGGCG AGGCCTTTGG CGCCGCCCTG CCCGCCCATG TCACGCCCGA GTTCGTCCGC 
GCCGAGATCG CCGCCGGGCG GGCGATCATC CCGGCCAACA TCAACCATCC CGAGCTTGAA 
CCGACGATCA TCGGCCGCAA CTTCCTGGTC AAGGTCAACG CCAATATCGG CAATTCGGCC 
CTGGGATCGT CGATCGAGGA CGAGGTGGCA AAGCTGGTCT GGGCCATCCG CTGGGGGGCC 
GACACGGTGA TGGATCTGTC GACGGGCAAG GCCATCCACG CCACCCGCGA ATGGATCTTG 
CGCAACAGTC CGGTGCCCAT CGGCACCGTT CCCCTGTATC AGGCTTTGGA AAAGGTGGGC 
GGCGACGCCA CCCGCCTTGA CTGGGCGGTG TTCGAAGACA CCCTGATCGA ACAATGCGAA 
CAGGGCGTTG ATTATTTCAC CATCCATGCC GGGGTGCGGC TGGCCCATAT TCCGCTGACC 
GCGTCGCGCA CCACCGGCAT CGTCAGTCGC GGCGGTTCGA TCCTGGCCAA ATGGTGCTTG 
TCCCACCACC GCGAGAATTT CCTTTATGAG CGCTTCGCCG ATATCTGCGC CATCCTGCGC 
CGCTATGACG TGGCCTTTTC GCTAGGCGAC GGCCTGCGCC CGGGATCGGT GGCCGATGCC 
AATGACGCCG CCCAATTCGC CGAACTCGAC ACTTTGGGCG CCTTGACGGC GGTGGCCTGG 
GAGCACGGCT GTCAGGTGAT GGTCGAAGGC CCGGGCCATG TGCCCATGCA CAAGATCAAG 
GCCAATATGG ACCGCCAACT CGCCACCTGC GGCGAGGCGC CGTTCTATAC CCTGGGGCCC 
TTGACCACCG ATATCGCGCC CGGCCACGAC CACATCACCT CGGCGATCGG CGCGGCGATG 
ATCGGCTGGT TCGGCACCGC CATGCTGTGC TACGTCACCC CCAAGGAACA CCTGGGGCTG 
CCCGATCGCG CCGACGTCAA GGCCGGGGTG ATCGCCTATA AGCTGGCCGC CCATGCCGCC 
GATATCGCCA AGGGGCATCC CGCCGCCCAG CTGCGCGACG ACGCCATCAG CAGGGCGCGC 
TTCGATTTCC GCTGGAGCGA CCAGTTCAAC CTCGGCCTCG ATCCCGAAGG CGCGCGGGCC 
TTCCACGACG AAACCCTGCC CCATGCCGCC CATAAGACGG CGCATTTCTG TTCGATGTGC 
GGGCCGAAGT TCTGTTCGAT GAAGATCAGC CATGATATCC GCGACGGCGC CCTCGAGGGG 
GCGGACGCCC TGACCCAGGC CGGACTGGAC CAGATGAGTG CGACCTTCCG CGCCAGCGGC 
GGCGAGGTCC ACCTTGATGC GCAAGCTCTC GACGCCCTCG CCTGGGAGGG GAAACCCGCG 
CGATAA 

 

Protein sequence

MTAPFLSSLS PTSPLASATA PFPGSRKVYA RPADAPHLRV PFREIILSDP GEAPVRVADP 
SGPYSDPEAT IDLRQGLARH RASWASARGN STVTAGRPAP SEGDFEAFPL TYAPLRRRDE 
TPFTQLEYAR AGVITDEMIY VATRENLGRD SAVAGACARL AGGEAFGAAL PAHVTPEFVR 
AEIAAGRAII PANINHPELE PTIIGRNFLV KVNANIGNSA LGSSIEDEVA KLVWAIRWGA 
DTVMDLSTGK AIHATREWIL RNSPVPIGTV PLYQALEKVG GDATRLDWAV FEDTLIEQCE 
QGVDYFTIHA GVRLAHIPLT ASRTTGIVSR GGSILAKWCL SHHRENFLYE RFADICAILR 
RYDVAFSLGD GLRPGSVADA NDAAQFAELD TLGALTAVAW EHGCQVMVEG PGHVPMHKIK 
ANMDRQLATC GEAPFYTLGP LTTDIAPGHD HITSAIGAAM IGWFGTAMLC YVTPKEHLGL 
PDRADVKAGV IAYKLAAHAA DIAKGHPAAQ LRDDAISRAR FDFRWSDQFN LGLDPEGARA 
FHDETLPHAA HKTAHFCSMC GPKFCSMKIS HDIRDGALEG ADALTQAGLD QMSATFRASG 
GEVHLDAQAL DALAWEGKPA R