Gene Rru_A1817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A1817 
Symbol 
ID3835241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp2113845 
End bp2116682 
Gene Length2838 bp 
Protein Length945 aa 
Translation table11 
GC content55% 
IMG OID637825916 
ProductTPR repeat-containing protein 
Protein accessionYP_426904 
Protein GI83593152 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.703136 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCGTC TTCATCCTAT CTATTCCGGT CAGTCCGACA GGCCTGCCAT TCTGTTCGTT 
CACGGACTTG ATGGCCATTG GCTTGAAACC TGGCGCCATG ACGCCTGCTC CAAGGACGAC
TGCTGGCCCC ATTGGGTAGG GGAAGAGACC GGATGCGACA TCTGGAGCTT GGAGTACGAT
GCCGCGCTTT CTGGCTGGTT GGATCAGGCC ATGCCCCTCC CCGACCAAGG TTCACAGGTT
ATGGACCTTT TGGCGAGTGC TCCGGCCCTG AAAGGCAAAC CCCTTGTGTT CGTAACCCAC
AGTTTGGGGG GGATTTTGGT CAAAACGGCG CTAGTCTATG GGGCCGAAGA AGATAGAAGA
TTTCAGCATA TCGTTGATCA CGTCCTCGGC GTTGTTTTTA TTGCGACGCC TCATTCCGGG
GCCCAGCTCG CCACGCTGGC AAGAGTGATA AAATACCTTC TCAGAATAAA TCCGCCAGTT
GGCAACCTTG AGCACCACGA TCCACACCTG AGGACACTGA ACCGACGATA TCAGACTCTG
GTCAAGGAGC GAGGAATCGA GGGATACGTT TACGCCGAGA AACGGGGTGT GAAGATTGGC
CCCCGGGGTT TTGGTGGCTG GCTGCGGCGC ATTGAGCCGA CGGTGATGGT GGTCGATCCG
GGCAGTACAG ATCCCAGCCT TCCCGAAATC CAACCCATCA GTCTTGCGGA AGATCATATC
AGTATTTGTA AGCCGCCCGA CCGGCAACAG CAGATCCATT TGTCTTTGTG CCACGTCTTA
AAGGAAAAGA TCATCCCCCT CGCCGGCGAT CGTGGGATGG GGACGACAGG GGTGGGGTTG
AAGCTCCTGG AGTCCGGTAC CGCCCAGGAA AACCCAGCGG CTCACATGCC ACCAGGGCGG
CTTGTTGGTC CAGATGATAA CCGGCTATCC CCGCGCGAGG GCAAGGTGTA TGGCCGTAAA
ACCCAAGAAA ACGACGTTCT GGCCTTTCTG AAGGGGAGCG AGCCGGTCAA AGTCGTGGGC
GGGGTCGCAG GCGTAGGGAA AACCGAGGTT TGTAAGGCCG CCCTCAAAAC TTGGCTGCAC
ACCAGTCCCC GTCCCGTGGC CTATTACGTG CGTGTTCCCG ATCGCGCCCG CTCGGCGGAC
TTGGTGCTCC AGGTGGGGAA GGCTGTCGGG ATTGAAAATT GTGAAAGTCT CGCGCAACTT
CTTGGCGTGA TCCCTGTGGG ATTGTACTAC CTGGATAATC TGGAAAGCGT TGCCGACGAC
CAAGAAGGCC GGAATGCCCT GCGTGATTTG GCCCAAAAAC CGGGTGTTCG GATACTGGCT
TCATCACGGA CTCGTCTCGA TACTATTTTT GGAGCTCCTA TCGAGATCAA ATGTCTATCG
GCTCCCGATG CTTTGGCGCT GTTTCGGGAT TTGTGGCCCC CCACCCAGAC GCTTCCGAAG
GATGACGAGT TGCAAGCCTT CGTGATCGGT AAACTAGGGG GGCATGCCCT CAGCCTTGTT
CTGGTGGCTC GTTTGGGGAT GTGCCTTTCC TTTGATGCCC TGCGCCGCCG CTGGGACGAA
GAAGGGGCCG CGCTGGCCTG CGATGGGGTT GAGGATGATA CACGCACCAG CAACTTAACG
TTCAACCTAC GGCTGACGGC CGAGGTCCTG GCCCCCACAC CAGGCGCCTT GTCCGTCTGG
GTCCTAATGG CTTTATTCGA AGAAGGGATT CCTGAAGCGG TATTGGAAGA GGTGGAGCGG
CGCGGACAAT GGCCCACCTT GGCGCGACAC CGCCTTGCTG TGCACCACTT GATTTCCAAA
AGGGGAGACC GGTGGTTTCT TCCCCCTCCC GTGGCTCGCT ATGCTCGATA TGCCGCGGTT
ACCGAACAAG ATGGCTTTTG CTGGCGGAAA AGCCGACAGC CGATCCTGGA CTTGTTTTTG
GTTTTTGCCG AAAAAGCCTC TTCTTTTGAC TCAAGTCCAG AAACATTAAA AGCAAAGAAA
TGGATTCTAG AATTTTTCAA TACAATTTCT ATTGTAATTG AGTGTGAATT AGAATCCAAT
GTTCAGAACA AATTTTGGCT TAACCGTATG AGTTATTTTC TTCGCGATAT TTACCAGCAG
CGGATCGCTG TGAGCCCCGC CTTGCTGAGA AAACTGGCCG ATGCAGGAAT CCAGCCGGCC
AACACGCTCC GGAGTCTCGG CGATCTGGCA AGCCGGTTGG GGCAGGTGGA CAAGGCGCGA
TCTTTGTATG AAAAGGCGCT CGGGCTTTCC CAACAGGAGC AATCAGGTCT TGGTCAGGCC
AACGCGCTAA AGGCCCTCGG CGATCTGGCA AGCCGGTTGG GGCAGGTGGA CAAGGCGCGA
TCCTTGTATG AAACGGCGCT CGGGCTTTTC CAACAGGAGC AACATGGTCT TGGTCAGGCC
AACACGCTTC ACGGCCTCGG TGATCTGGCA AGCCAGTTGG GGCAGGTGGA CAAAGCGCGA
TCCTTGTATG AAAAGGCGCT CGGGCTTTTC CAGCAGGAGC CAAATGGTCT TGGTCAGGCC
AACACGCTGA AGAGCCTCGG CGCTCTGGAA TATCGGTTGG GGCAGGTGGA CAAGGCGCGA
TCTTTGTATG AAAAGGCGGT CGATCTCTAT CGAATTGAAC AAGAGCCACT AGGGCTTGCC
TATTCTCTTA CGAATCTTGC TCTATGCTTT GAGGTTCTGA AAAACCTTTC CAAGCGCAAC
CAAGTATTAA AAGCTGCCTT TGTAGCTAGT CGTGATGCCA ACAATGAGAT AGTTCAAATC
TATCTGAAGG AGGCCATCCC GGAAATGCCC GGGGCAGATG TTCTATATGA TTCGTGGTTA
AAGGGGCAGT CTCGGTAA
 
Protein sequence
MARLHPIYSG QSDRPAILFV HGLDGHWLET WRHDACSKDD CWPHWVGEET GCDIWSLEYD 
AALSGWLDQA MPLPDQGSQV MDLLASAPAL KGKPLVFVTH SLGGILVKTA LVYGAEEDRR
FQHIVDHVLG VVFIATPHSG AQLATLARVI KYLLRINPPV GNLEHHDPHL RTLNRRYQTL
VKERGIEGYV YAEKRGVKIG PRGFGGWLRR IEPTVMVVDP GSTDPSLPEI QPISLAEDHI
SICKPPDRQQ QIHLSLCHVL KEKIIPLAGD RGMGTTGVGL KLLESGTAQE NPAAHMPPGR
LVGPDDNRLS PREGKVYGRK TQENDVLAFL KGSEPVKVVG GVAGVGKTEV CKAALKTWLH
TSPRPVAYYV RVPDRARSAD LVLQVGKAVG IENCESLAQL LGVIPVGLYY LDNLESVADD
QEGRNALRDL AQKPGVRILA SSRTRLDTIF GAPIEIKCLS APDALALFRD LWPPTQTLPK
DDELQAFVIG KLGGHALSLV LVARLGMCLS FDALRRRWDE EGAALACDGV EDDTRTSNLT
FNLRLTAEVL APTPGALSVW VLMALFEEGI PEAVLEEVER RGQWPTLARH RLAVHHLISK
RGDRWFLPPP VARYARYAAV TEQDGFCWRK SRQPILDLFL VFAEKASSFD SSPETLKAKK
WILEFFNTIS IVIECELESN VQNKFWLNRM SYFLRDIYQQ RIAVSPALLR KLADAGIQPA
NTLRSLGDLA SRLGQVDKAR SLYEKALGLS QQEQSGLGQA NALKALGDLA SRLGQVDKAR
SLYETALGLF QQEQHGLGQA NTLHGLGDLA SQLGQVDKAR SLYEKALGLF QQEPNGLGQA
NTLKSLGALE YRLGQVDKAR SLYEKAVDLY RIEQEPLGLA YSLTNLALCF EVLKNLSKRN
QVLKAAFVAS RDANNEIVQI YLKEAIPEMP GADVLYDSWL KGQSR