Gene Rru_A0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A0550 
Symbol 
ID3833657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp649402 
End bp651189 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content73% 
IMG OID637824634 
ProductTPR repeat-containing protein 
Protein accessionYP_425641 
Protein GI83591889 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.492764 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCCGC CCCCCGCCCC GAACCCGATC CGCGATAGCC TGATCGCCCG CGCCGATGCC 
CTGCGCGAGG GCGGCGCCCC GGCCGAAGCC CGCGATCTCT ATCGTCTGGT GCTCGACCGC
CACCCCGGCC ACGGACCGGC CCTGGCCGGT CTTGGCCGCA TTCTGCTTGG CCTTGGCCAA
CCGACGGCGG CCCTTGAAAG CCTGGGCGCG GCGGTGGCTG CCGATCCGAC GCGGCTGGAC
TGGCTGGCCG ATCTGGCCGT CGCCCTGGCC GGGGCGCGCC GTCCGGCCGA AGCCCTGAGC
GCCGCCGAGG GTCTTCCCGC CACCGCCGGC GCCTTGGGCT TTCGCGCCGA CCGCCTGGAG
GAGCTTGGCC GGCGCGACCA AGCCATCGCC CTGCTCGACG ACGCCCTTCG CCGTCACCCC
GACGAGGCGG AATTGCACCG CCGCCAGGGG GTGCTGCTGC GCCGGGCCGG CCGCGCCGCC
CAGGCCATCG CTCCTTGGCG GGCGCTGGTG GCGCTTCGCC CCGGGGATGC CGCGGCGTGG
TCGAGCCTGG GGGCCGGCCT GGGCGAGAGC GGCCTTGACG AAGAAGCCGA GAAGGCCTTG
CGCCGGGCCG TCGCCCTGGC CGCCGACGAA CCCGATTGGA CCTATAACCT CGCCCATTTC
CTGATCGAGC GCGACCGGCT GGAAGACGCC CTGCCCTTGC TGGACGCCGC CGTCGCCCGC
GCCCCCGAAC GGGCCCATTA TCACACCAAC CTTGGGGTTT GCCGGCTGGG ATTGGGCGAT
ATCAAGGGGG CGATCGCCGC CCACCGCCAA GCCCTAGCCC TTGATCCCGA CGAGCCGGAG
GCCCGCTATG ATCTGGCCTG GGCCCTGCTG CTAGCCGGCG CCTGGGAGGA AGGCTGGGCC
GCCCATGAGG CGCGCTGGCG GATGGGCCGC TTCACCGGAC GCCGCGCCGC CGGCCCCGCG
CCGACCGACT GGCCGATGCC GCTGTGGGAT GGCCAACCGT TGGGCCCCGG GCGCACCTTG
TTGCTCCATG CCGAACAGGG CTTCGGCGAT AGCCTGATGA TGAGCCGGCT GATCATCCCC
GCCCTGGCCC GCGCCGGCGA CGCGCAAGGC ATTATCGAGT GCCCGCCGTC TTTGGTCGGC
CTGCTCGCGC AATCCTTGGG ACCGGCCCTG GGACCGGCGG TGCGAGTCGT CGCCCAGGCC
GAGTCTCCCC CCGCCGCCGA TGCCCATCTG CCCTTGATGT CGCTGCCCCA CCGCTTAGGC
GTCGACAGCG AGACCATCCC TGGCCCCGAC CGCTGGCTCC GGGCCGAGCC GGCACCGCGC
CCGCCCTCCT CCCCCCCCCG GGTGGGACTG GTCTGGGCCG GCGATCCGGG CAATCGCATG
GACAGGCTGC GCAGTTGTCC GGCGACCGCG CTGCGCCCCT TGTTCGATCG GGTCAAAGAC
GCCGGGTTGG ATATCGCCTG GACGGGACTA CAACTCGGCC CGCCAGCCGC CGATCTGCCC
GATTTGCCCG CGGCGCTAGC GCCGGGCGGC GATTTCGCCG CCACCGCCCG CGTCGTCGCC
GCCCTTGATC TGGTGATCGG CGTCGATACC GCCGTGATCC ATCTCGCCGG CGGCCTGGGC
GTGGAAACCT GGGTGATGCT GGCCTATGTG CCCGATTACC GCTGGATGAT GGACCGCGAC
GACAGCCCCT GGTACCCCTC GGCGCGGTTG TTCCGCCAAT CCCGTCGCGG CGACTGGCGG
GGAGTCATCG CCCAAGTGGC CGCGGCCTTG ACCAAGCGTT TCGGATAA
 
Protein sequence
MSPPPAPNPI RDSLIARADA LREGGAPAEA RDLYRLVLDR HPGHGPALAG LGRILLGLGQ 
PTAALESLGA AVAADPTRLD WLADLAVALA GARRPAEALS AAEGLPATAG ALGFRADRLE
ELGRRDQAIA LLDDALRRHP DEAELHRRQG VLLRRAGRAA QAIAPWRALV ALRPGDAAAW
SSLGAGLGES GLDEEAEKAL RRAVALAADE PDWTYNLAHF LIERDRLEDA LPLLDAAVAR
APERAHYHTN LGVCRLGLGD IKGAIAAHRQ ALALDPDEPE ARYDLAWALL LAGAWEEGWA
AHEARWRMGR FTGRRAAGPA PTDWPMPLWD GQPLGPGRTL LLHAEQGFGD SLMMSRLIIP
ALARAGDAQG IIECPPSLVG LLAQSLGPAL GPAVRVVAQA ESPPAADAHL PLMSLPHRLG
VDSETIPGPD RWLRAEPAPR PPSSPPRVGL VWAGDPGNRM DRLRSCPATA LRPLFDRVKD
AGLDIAWTGL QLGPPAADLP DLPAALAPGG DFAATARVVA ALDLVIGVDT AVIHLAGGLG
VETWVMLAYV PDYRWMMDRD DSPWYPSARL FRQSRRGDWR GVIAQVAAAL TKRFG