| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0506 |
|---|
| Symbol | |
|---|
| ID | 3834204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 597429 |
|---|
| End bp | 599249 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637824590 |
|---|
| Product | glycoside hydrolase |
|---|
| Protein accession | YP_425597 |
|---|
| Protein GI | 83591845 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGAC GGTTTGGCGC CCGGGTCGAG GGCGATGGCG TGCGGTTTTC GCTCTGGGCC
CCCGCCGCCG AACGGGTTGA GGTGGTTATC GAAGGCGCGG CCGAATCGCG CCCCGTCGCC
ATGGTGCCCG GCGGCGAGGG CTGGTTTGGC GCCATGGTCG GCGGCATCGG CGCCGGGGCG
CTTTATCGCT TCCGCATTGA TGGCGCCGAT CTGGTGCCCG ATCCAGCCTC GCGCTTCCAG
CCCCGGGACG TGGGCGGCCC CAGTCAGGTG GTCGATGCGA GCGGCTATGC CTGGAAGACC
GACGGCTGGA AAGGCCGTCC CTGGGCGGAG ACGGTGCTTT ACGAACTGCA TCTGGGCACC
TTCAGCCGTA AGGGAACCTA TGAGGGGGCG CGGGCCCGCC TGGGGGATCT GGTCGATCTG
GGGGTTAGCG CCATCGAATT GATGCCGCTG GCCGATTTCG TCGGTCAACG CAATTGGGGG
TATGACGGCG TGTTGCCCTT CGCCCCCGAC AGCGTCTATG GCACGCCCGA GCAGTTGAAG
GCGTTGATCG ACGCCGCCCA CGGCCTGGGG CTGATGGTTT TTCTTGATGT CGTCTATAAT
CACTTCGGCC CCGAGGGCAA TTGGCTGGGG CGCTATGCGC CAAGCTTCTT CACCCAGGCC
CACCAGACCC CCTGGGGGGC GGCCATCGAT TTCGAACGGC CCGAGGTGCG CGATTTCTTC
GTGGCCAATG CTTTGCAATG GCTGGAGGAG TATCGCTTCG ACGGCCTGCG CTTCGATGCC
GTCCACGCCA TCCTCGATGC CGAGGAACGC CATATCCTGG GCGAGATCGC CGTGGCCGTC
CGCGAGGCCT TGCCGGCGGA CCGCCACGTC CATCTGGTGC TGGAAAACGA TGCCAATGAA
GCCCGCCGGC TGATCGGCGG AACCGACGTG GTGGCGGTGC GCGGGCGTTA TGACGCCCAG
TGGAACGATG ATATCCACCA CGCCTTCCAT GTGGTGGCCA CCGGCGAGAC CGGCGGCTAT
TACGCCGATT ACGCCGCCCA GCCGCTGGCC CATCTTGGTC GTTGTCTGGC CGAAGGCTTC
GCCTATCAAG GCGAGTCCTC GGCCCATCGC GGCGGCATGG CGCGCGGCGA GCCGACGACG
GCGCTGCCGC CGACGGCCTT CGTCGCCTTT CTGCAGAACC ACGATCAGAT CGGCAATCGG
GCTTTGGGGG AAAGATTAAG CACCCTGGCC GCGCCCGACC GGTTGCGCGC CCTGCGCACG
ATCTTGCTGC TCGGGCCGCA GATCCCGATG CTGTTCATGG GCGAGGAATG GTCGAGCTCG
CGGCCCTTCC TGTTCTTTTG CGATTTCCAC GGCGATCTGG CCGAGGCGGT GCGCGAGGGG
CGTCGGCGGG AATTCGCCGC CTTCCCCCAA TTCTCCACCC CGGAAACCCG CGATCGCATT
CCCGATCCCA ATGCCCCGGA AACCGCCCGG GCCTGCGTGC TCGACTGGTC CGAGCGCGAT
CAGCCGACGG GCGCGGCGGT GCTGGCCCAT CACAAACACC TGCTGGAGCT GCGCTTTGCC
AAGATTGTGC CCTTGCTGGG CCGGCTGCGG CCGGGGGGCG GACGCTGCGA GCGCATCGGC
GAGGGCGGTC TGGCGGTGCG CTGGGGGATC GACGACGGGC GCGATCTGCT GATGCTGGCC
CAGCTTGCCG AGGCCGGATC ATTGCCCGGC GCCCCGCCGC AGGCCGATTT GATCTATCGC
AGCGACGGCG GCGAGCGGGC CGAAGCGCCC CTTGGTCCGT GGAGCGTGCT TTTCGCCCTG
GTGCCGGAGA CGAGCCGATG A
|
|---|
| Protein sequence | MTRRFGARVE GDGVRFSLWA PAAERVEVVI EGAAESRPVA MVPGGEGWFG AMVGGIGAGA
LYRFRIDGAD LVPDPASRFQ PRDVGGPSQV VDASGYAWKT DGWKGRPWAE TVLYELHLGT
FSRKGTYEGA RARLGDLVDL GVSAIELMPL ADFVGQRNWG YDGVLPFAPD SVYGTPEQLK
ALIDAAHGLG LMVFLDVVYN HFGPEGNWLG RYAPSFFTQA HQTPWGAAID FERPEVRDFF
VANALQWLEE YRFDGLRFDA VHAILDAEER HILGEIAVAV REALPADRHV HLVLENDANE
ARRLIGGTDV VAVRGRYDAQ WNDDIHHAFH VVATGETGGY YADYAAQPLA HLGRCLAEGF
AYQGESSAHR GGMARGEPTT ALPPTAFVAF LQNHDQIGNR ALGERLSTLA APDRLRALRT
ILLLGPQIPM LFMGEEWSSS RPFLFFCDFH GDLAEAVREG RRREFAAFPQ FSTPETRDRI
PDPNAPETAR ACVLDWSERD QPTGAAVLAH HKHLLELRFA KIVPLLGRLR PGGGRCERIG
EGGLAVRWGI DDGRDLLMLA QLAEAGSLPG APPQADLIYR SDGGERAEAP LGPWSVLFAL
VPETSR
|
|---|
| |