| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0493 |
|---|
| Symbol | |
|---|
| ID | 3834022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 578808 |
|---|
| End bp | 580331 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637824578 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_425585 |
|---|
| Protein GI | 83591833 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.145536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCC ACCCAGCGCC TACCGTGCCG ACACAAGACC GTCGGCCCCA TGCGGTCGTG
ATCGGAAGCG GGTTCGGCGG GCTTGCCGCC GCGGTGCGTT TGGGAGCCCG GGGGTACAGG
GTGACCGTTC TGGAAAAGCT GGGGGGACCG GGCGGTCGCG GCGGGGTGTT CAAGCAAGAC
GGCTTCACCT TCGATGCCGG TCCGACCATC GTCACCTTGC CCAGCCTGTT CGAAGAGCTG
TGGACCCTGT GCGGACGCCA GATGTCCGAC GATGTCGACC TGCGGCCGTT GACACCTTTT
TATACGATTC GCTTCAACGA CGGCGAGACC TTCCGCGCCC AATCCGATCC CGAGGCCATG
CGCGCCGAGG TCGCCCGCTT GTCGCCCGGC GATGTCGAGG GCTACGAGCG CTTCATCGCC
GAAAGCGAGG ATATCTATAA GGTCGGCTTC GAGCAGATGG CCGACAAGCC GTTCTCGTCG
ATCACCGACA TGCTGAAGGT GGTGCCCCAG ATGCTCAAGC TGGGCGCCCT GCGCTCGGTC
TGGGGCCATG TCGCCAAGCA TGTCGCCGAT CCGCGCCTGC GCATCGCGCT GAGTTTCCAT
CCGCTGTTCA TCGGCGGTAA CCCGCTGAGC GTGACCTCGA TCTATTCGAT GATCGCCTTT
CTTGAACGGC GCTGGGGCGT GCATTTCGCC ATGGGCGGCA CCCATAGCTT GGTCAAAGGG
CTGGTCGGGC TGATCGAAGG CCAGGGCAAT CACCTGCGCT ATAACGCCGG CGTCGCCGAG
ATCTTGGTGA AGAACGACCG GGCCTGCGGC GTGCGGCTGG AGACCGGCGA GGAGATCGCC
GCCGATATCG TCGTCTCCAA CGCCGATTCC GCCGCCACCT ATAAAAACCT GCTGCCCGCC
GCCCATCGCC GCTGGTGGAG CGACCGGCGG CTGGCGTGGT CGCGCTATTC GATGAGCCTG
TTCATCTGGC ATTTCGGCAC CAAGGGCACC TATCCCGATG TCGCCCATCA CACCATTCTG
ATGGGGCCGC GCTATCACAC GCTGATCGCC GATATCTTCC AGGCCAAGAC CCTGGCCAAG
GATTTCAGCC TCTATCTCTA TCGCCCCACC GCCACCGACC CGTCGATGGC GCCCGAAGGC
TGCGATTCCT TTTACGTGCT GTCGCCCGTG CCCCATCTGG GTGGCGGTCA GGATTGGGCG
CTTGAAGCAG AACCCTATCG CAAGGCGATC CTGGCCGAAC TCGAACGCAC CGTTCTGCCC
GGCCTGGGGG CCAAGATCGT CACCTCGAAG GTGGTGACCC CCGTTGATTT CCGCGACGGA
CTGTCCAGCC TGAACGGCGC GGCCTTCGGT CTGGAACCGG CCTTTACCCA AAGCGCCTGG
TTCCGCCCCC ACAATAAAAG CGAAGAGATC GACCGGCTTT ATCTGGTTGG GGCCGGAACC
CATCCCGGAG CCGGCCTGCC CGGCGTCCTG TCTTCGGCAA AAATCCTCGA TACGGTGGTG
CCCGATGCCT CGGTCCTGGT CTAA
|
|---|
| Protein sequence | MKLHPAPTVP TQDRRPHAVV IGSGFGGLAA AVRLGARGYR VTVLEKLGGP GGRGGVFKQD
GFTFDAGPTI VTLPSLFEEL WTLCGRQMSD DVDLRPLTPF YTIRFNDGET FRAQSDPEAM
RAEVARLSPG DVEGYERFIA ESEDIYKVGF EQMADKPFSS ITDMLKVVPQ MLKLGALRSV
WGHVAKHVAD PRLRIALSFH PLFIGGNPLS VTSIYSMIAF LERRWGVHFA MGGTHSLVKG
LVGLIEGQGN HLRYNAGVAE ILVKNDRACG VRLETGEEIA ADIVVSNADS AATYKNLLPA
AHRRWWSDRR LAWSRYSMSL FIWHFGTKGT YPDVAHHTIL MGPRYHTLIA DIFQAKTLAK
DFSLYLYRPT ATDPSMAPEG CDSFYVLSPV PHLGGGQDWA LEAEPYRKAI LAELERTVLP
GLGAKIVTSK VVTPVDFRDG LSSLNGAAFG LEPAFTQSAW FRPHNKSEEI DRLYLVGAGT
HPGAGLPGVL SSAKILDTVV PDASVLV
|
|---|
| |