Gene Rru_A0089 details

Gene Information

• Locus tag: Rru_A0089
• ID: 3834282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 102652
• End bp: 104541
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637824159
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_425181
• Protein GI: 83591429
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0181751
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTCCCG ACGTTTCCCC TCTCCCATCC CCCGGTTCCC CCCTCCCATC CCCCGGTTCG 
CCCTGCGCGG ACGCGGTCTC CGCCGATCCC GCCCGCGTGT TGTTGGCTGA TATCTGGGGA 
TTCAAGGATT TCCGCCCCGG TCAGGAAGCG ATCATCCGCG CCGTGCTGGG CGGCGAGGAC 
GTGCTGGCGG TCATGCCGAC CGGGTCGGGC AAATCGCTGT GCTACCAACT GCCGGCGCTG 
ATGCGCCAGG GGGTGACCCT GGTCGTCTCG CCGCTGATCG CCCTGATGCG CGATCAGGTG 
GCCCAGCTTG ACGCCCTGGG GGTGGCCGCC GGGGCGCTGA ATTCCTCGAT CGACATGGAC 
GGCTATCGCC GCGTGATGGA TGGGTTGCGC GGCGGCCGTC TCAAGCTGCT CTACGTCGCC 
CCCGAACGGC TGGCCCGCCC CGATACCCTG TCCCTGCTGC GCGACAGCGG GGTGACGGCC 
CTAGCCATCG ACGAGGCCCA TTGCGTCAGC CAATGGGGCC ACGACTTCCG CCCCGACTAC 
CTGTGTCTGG GCAAGGTGCG CGAGGATCTG GGCGGGGTGC AGACGGTGGC CTTCACCGCC 
ACCGCCGATG CCGCCACCCG CGATGATATC GCCGGACGGC TGTTCCCGGC GCCGCCGCGC 
CTGTTCATCG GCGGCTTCGA TCGCCCCAAC CTGCGCCTTG CCATGCGGCC CAAGGGCGAC 
ACCCGGCGGC GGATGTTCGA GTTCGTCGCC GCCCATACGG GCGAAAGCGG CGTGATCTAT 
TGCGGCAGCC GGGCGCGCAC CGAGGAATTG GCCGAGGGCC TGCGCGGCGC CGGCCACCGG 
GCCTTGCCCT ATCACGCCGG CCTCGACAAG CCGGTGCGCG ACGCCAATCA GGATGCCTTC 
CTGGCCGAGG ACGGGCTGGT GATGGTCGCC ACCGTCGCCT TTGGCATGGG CATCGACAAG 
CCCGATGTCC GCTTCGTCTG CCATGCCGAT ATGCCGCGCT CGATCGAGGC CTATTATCAG 
GAGATCGGCC GCGCCGGCCG CGATGGTCTG GCCGCCGATA CCCTGACCTT CTATGGCCTG 
GACGATGTCC GCCTGCACCG CATGCGCATC GAGGAAAGTC AGGCCGGCGA CGAGCAAAAG 
CGCGTCGAGA TCCAGCGGCT GAACGCCCTG CTGGCGCTGT GCGAAGCGCC GCGCTGCCGG 
CGCCAGACCC TGCTCGGCTA TTTCGGCGAA CGCACCGAGC CGTGCGGCAA TTGCGATCTA 
TGCATCAATG GCGTGGAAAG CTTCGACGGC ACCATCGAGG CCCAGAAGGC GATGTCGGCG 
ATGCTGCGCA CCGGCCAGCG CTTCGCCACC GAGCATCTGA TCAATATCCT GGTCGGCACC 
CAGACCGACG CCATCACCCA GTACGGTCAC GATAAATTGC CGACCTTCGG CGTGGGCAAG 
GATCACACGC GCAATGTCTG GCGCTCGATC TTCCGCCAGA TCAGCGCCGG CGGCCTGATC 
AGCCTGGATA TCGCCAATCA TGGCCGCTGG CTGATGACCG AGGCCGGCCG CGCGGTGCTG 
CGCGGACAGG CGGGCGTCGC GCTGCGCTCC GATGTGCTCG AAGCCGCCGG CCGCGGCGAG 
CGCAAGGACA AGGAGCGCCG GGCCAGTGCT CCGGCCGTCC AGCTCGAGGC CGACGATCGC 
GCCCTGTTCG ACGCCCTGCG CGCCAAGCGC CAGGAGCTGG CGCGGGCCGA AAACGTGCCG 
GCCTATGTGG TCTTCGCCGA TCGCACCCTG ATCGAACTGG CGACCAAACG CCCGCCCAGC 
CTTGACGCCA TGCGCGAGAT CCACGGCATC GGCCAAAGCA AGCTCGCCCG CTACGGCGCG 
GCCTTCCTCG AGGTGATCAC CGCCGGCTGA 

 

Protein sequence

MVPDVSPLPS PGSPLPSPGS PCADAVSADP ARVLLADIWG FKDFRPGQEA IIRAVLGGED 
VLAVMPTGSG KSLCYQLPAL MRQGVTLVVS PLIALMRDQV AQLDALGVAA GALNSSIDMD 
GYRRVMDGLR GGRLKLLYVA PERLARPDTL SLLRDSGVTA LAIDEAHCVS QWGHDFRPDY 
LCLGKVREDL GGVQTVAFTA TADAATRDDI AGRLFPAPPR LFIGGFDRPN LRLAMRPKGD 
TRRRMFEFVA AHTGESGVIY CGSRARTEEL AEGLRGAGHR ALPYHAGLDK PVRDANQDAF 
LAEDGLVMVA TVAFGMGIDK PDVRFVCHAD MPRSIEAYYQ EIGRAGRDGL AADTLTFYGL 
DDVRLHRMRI EESQAGDEQK RVEIQRLNAL LALCEAPRCR RQTLLGYFGE RTEPCGNCDL 
CINGVESFDG TIEAQKAMSA MLRTGQRFAT EHLINILVGT QTDAITQYGH DKLPTFGVGK 
DHTRNVWRSI FRQISAGGLI SLDIANHGRW LMTEAGRAVL RGQAGVALRS DVLEAAGRGE 
RKDKERRASA PAVQLEADDR ALFDALRAKR QELARAENVP AYVVFADRTL IELATKRPPS 
LDAMREIHGI GQSKLARYGA AFLEVITAG