| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0062 |
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| Symbol | |
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| ID | 3834104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 69560 |
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| End bp | 71530 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637824132 |
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| Product | terpene synthase, squalene cyclase |
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| Protein accession | YP_425154 |
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| Protein GI | 83591402 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGCGA CCGCACCCCT TCGGGATCCC GGCGCGCCGA GCGCGGAAAA CTGTTCCGTC
GATCGGCGGG AACTTGACGA TGTCATCGGC GAATCCTGCC GCTGGCTTGG CGAGCGCCAG
AATCAGGACG GCCATTGGGT CTTCGAGCTG GAGGCCGATG CAACCATCCC TGCGGAATAT
ATTCTGCTCA ACCATTTCCT TGACGAGATC GACGATGCGC GCGAAGCCCG CATCGCCAGC
TATCTGCGCG CCATCCAGGG CAAGCATGGC GGCTGGCCGT TGTTCCACGA CGGCGATTTC
GACATGTCGG CCACCGTCAA AGCCTATTAC GCCCTGAAGC TGACGGGCGA TGGCGTTGAC
GAGCCCCATA TGGTGCGCGC CCGTCAGGCG ATTCTCGAGC ACGGCGGCGC CGAGCGGACC
AACGTCTTCA CTCGCTTCAC CCTGGCGATG TTCGATCAGG TTCCCTGGCG CGCCTGCCCG
GTGACGCCGG TCGAAGCGCT TCTGTTGCCG CGATTCGCCC CCTTCCACTG GAGCAAGGTC
AGCTACTGGT CGCGCACGGT GATGACGCCG CTGATGATCC TCTATTCGCG CCGCGCCCGC
GCCGTCAATC CGCGCGGCAT CGGCGTGCGC GAGCTGTTCC GCCGCGACCC CGAGGTCATC
CGCGACTGGC TGAAGAACCC CACCGGCCAT TGGATCGGCG ATGCGCTGAT CCAGATCGAC
AAGGTGCTGC GGGTCATCGA GCCGGCGATC CATTGGGCCT TCCGCGATCG CGCCGAGAAA
TGGGCGCTCG ATTTCATCGA AGAGCGGCTG AACGGCCGCG ATGGCCTGGG CGGCATCTAT
CCGGCCATCG CCAATACCCT GATGGCCTAT CACACCCTGG GCTACGCCAA GGACCATCCG
GGCTATCGCA TCGCCCGCGA GGCGGTGGAC GGCCTTTGCA CCCCCCATGC CAAGGGCGAA
TACGTTCAGC CCTGCCTGTC GCCGGTCTGG GACACCTGCC TTGCCAGCCA CGCCATCCAG
GAAGCCGGGC AGAGCGCCGG CGACCGGGCG GTGGACCAGT CCAACGCCTG GCTGCGCGAG
CGTCAGGTGC TTGACGTGGT CGGCGACTGG AAAAGCAACC GCGGCCATCT GCGCCCGGGC
GGCTGGGCCT TCCAGTACAA CAACCCCCAT TACCCCGATG TCGACGATAC GGCCGTGGTG
GTGATGGCCT TGGCGCGTTC GAAGGAAGAC GAGGCCAACC GCGAGGCCAT CGCCCGGGCC
GAGGAATGGA TCATCGGCAT GCAGTCGTCC AACGGCGGCT GGGGCGCCTT CGACGCCGAG
AACGAACACG ACTTCCTCAA CCATGTTCCC TTCGCCGATC ACGGCGCCCT GCTTGATCCG
CCGACCGTCG ACGTCTCGGC CCGCTGCCTG GGCATGCTGG CCCAGCTTGG CCGGCCCAAG
ACCGATCCGG TGGTGGCACG CGGTCTGGAT TATTTGTGGC GCGAACAGGA GGCCGACGGC
TCGTGGTTCG GCCGTTGGGG CACCAATTAC ATCTATGGAA CGTGGTCGGC CCTCAACGCC
TTCAACGCCG TCGAGTGGGA CATGACCGAC CCGCGCATCT GTAAGGCGGT GGATTGGCTG
AAAAGCCGCC AGCGCGACGA CGGCGGCTGG GGCGAGGATT GCGCCACCTA TTGGAAGGAG
CGGCGCTCGG TCAGCAAGGC CAGCACGCCC AGTCAAACCG CCTGGGCGGT GCTTGGCCTG
ATGGCGGCCG GCGAAGTCGA CAGCCCCGAG GTCGAACGCG GCATCCGCTA TCTGCTCGAG
GCGCCGCGCG ACGGCGGCAA ATGGGAAGAA GAGCTTTATA ACGCGGTGGG CTTCCCCCGG
ATCTTCTACC TGCGCTATCA TGGCTACTCG GCTTACTTCC CGCTCTGGGC CCTGGCGCGC
TATCGCAACC TGACCAGCGG CAACTGCAAG CGGACCATCC ACGGCATGTG A
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| Protein sequence | MDATAPLRDP GAPSAENCSV DRRELDDVIG ESCRWLGERQ NQDGHWVFEL EADATIPAEY
ILLNHFLDEI DDAREARIAS YLRAIQGKHG GWPLFHDGDF DMSATVKAYY ALKLTGDGVD
EPHMVRARQA ILEHGGAERT NVFTRFTLAM FDQVPWRACP VTPVEALLLP RFAPFHWSKV
SYWSRTVMTP LMILYSRRAR AVNPRGIGVR ELFRRDPEVI RDWLKNPTGH WIGDALIQID
KVLRVIEPAI HWAFRDRAEK WALDFIEERL NGRDGLGGIY PAIANTLMAY HTLGYAKDHP
GYRIAREAVD GLCTPHAKGE YVQPCLSPVW DTCLASHAIQ EAGQSAGDRA VDQSNAWLRE
RQVLDVVGDW KSNRGHLRPG GWAFQYNNPH YPDVDDTAVV VMALARSKED EANREAIARA
EEWIIGMQSS NGGWGAFDAE NEHDFLNHVP FADHGALLDP PTVDVSARCL GMLAQLGRPK
TDPVVARGLD YLWREQEADG SWFGRWGTNY IYGTWSALNA FNAVEWDMTD PRICKAVDWL
KSRQRDDGGW GEDCATYWKE RRSVSKASTP SQTAWAVLGL MAAGEVDSPE VERGIRYLLE
APRDGGKWEE ELYNAVGFPR IFYLRYHGYS AYFPLWALAR YRNLTSGNCK RTIHGM
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