| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_5028 |
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| Symbol | |
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| ID | 6289874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010683 |
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| Strand | - |
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| Start bp | 71542 |
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| End bp | 73371 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642627422 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001901388 |
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| Protein GI | 187930902 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGCCT TCCTGAACCG TTTTGTTCGC AAACCGGCGC GGCTCGATCC CGGCGCGGCT
GGCCGTGGCG GTGCCGTGAC AGCCACGGAC AAGGCCAATC TGGTGCCCGA ACCGCCCGAA
GCGCTGGCAC CCCACGTCGT CTATCCGCGA GTGTTTGGCC CGCGTTTTGA ACAGATCGCA
GTTGATCTGA ATCTGCTCTC TACAGGCCAG GCCCAGGCAC TGCGCCAGCG GGCAGCAGGG
CAGGGTGGGT ATGTCGAATA CCTGGCTCCG ACGTTTGGCC TATCGTCCGA ACAGGTGCAA
CGTGTGCTGG CCGCGCAGGG TTTTGTCGTG CACGTGGATG CACGTCACTA TGGCACCCCG
CGCTTTCTAG CATGGGAAGC CGTGCTACGG CGCCTGGGTG CCACGCCCCA GGTCAGGAAA
GCCTCCGCCC AGGACCTGGC GGCGCTGCGC CGGGAGTTGG CCAATGCCGG GCGGCTGGAC
GATACCGATC TACAGACCCT GGCCAAGGCG CGTCAACTGA TCGCCGATGC TGCCGCAGTC
GGCGCCTCTG ACATTCACAT CCTGGTGCGC GAGGACCACA CCGAGGTCCA GATCCGCATC
AAGGGCGATC TGTGGACAGT CGCCTCGATG TCGATGCGCC GCGAGGAAGG TGAGCGCCTG
ACGCGCTCTA TGTATTCGGG CTTGGCCACC ATCAAGGAGG ACAGCTACAA GGCGCTGAAC
TTCCAGAATG CACAGATCAC AGGTGAAGCG CTGCCCGGCA CGGGGCTCAC CTCTGTACGG
ATTATTCGAG GGCCATCATT TCCGGTGGAG TCCGGTGGCG GCTTCTTGGT TGCACGTTTG
CAATATCGTG ATCTTGCGGC GCAATCCGAG GGCTCCCCAG AAGTTGCGAA GCGCTTGGAT
TTGTGCACGC CCAAAGCGCC ACCGGGCGCT TTCCGTTTGG GAGAGATGGG TTACACGCCG
CTGCAGGTGG AACTCGTCTC ACGGCTGATG CATCGCCCGA TGGGTGCTGT CATCGTGACC
GGCCCTACGG GCTCGGGTAA AACTACCACG CTCTATGAAT ACACGCGGGA ACGGGCGCGC
CTGCTCCCAC ATGACCGCCT GATCACCATC GAGGACCCCA CCGAATACCC GATGAACTGG
GCGATCCAGC TCGTCACCGA CAGCAAAAGC TTTCCGCAGA TGCTGACCAA GACGCTGCGC
ATGGACCCTG ATGTTGTCCT GCTCGGCGAG ATCCGCGACG CGGACGCGGG CGAGGCCACC
CTGCAGGCCG CCGCAACCGG GCACCAGGTG CCCACCACGC TGCACGTGAC CGACCCATTC
GAAACGTTCA CGCGGTTGAT GGGCATGGAC CATGTGCGGC TGTCACTGGA AATCATCTGC
AACCACAACC TGATTATCGG CCTGATCGCG CAGCGCATCG TGCAGATGCT GTGCCCGCAC
TGCAGTGTGC CTCTCGATCA GGCCAGCGAA CAGTTGCCAG CCTACATGCT GCGAGCCTTG
CATACCTGGG GGGACTTGTC CGGCGTGCGC GTGCGCGGCA CGGGTTGCCC GCACTGCGAC
GGCAAGGGCA TCGCTGGTGA GCAAGCAGTG GCCGAGGTGG TGGTGACCAG CGAAGCGCTG
ATGCAGGATT GCATCGAGCA CGGCGTGTTG GTAGCGCGTC GTAACCACCG CCGGCGTGCC
GGCTCCGATA AGCCGATGAT TGCCCACGCG ATCGATCTTG TGCTCGCGGG CCGGCTGGAC
CCTCGAGATG CCCAGCGCCG AGTCGATGCC ATTCCGATGC GGGATGAAAT CGATCTGCCG
CCGGACGAAA CGTCGGAGGT GACATCATGA
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| Protein sequence | MFAFLNRFVR KPARLDPGAA GRGGAVTATD KANLVPEPPE ALAPHVVYPR VFGPRFEQIA
VDLNLLSTGQ AQALRQRAAG QGGYVEYLAP TFGLSSEQVQ RVLAAQGFVV HVDARHYGTP
RFLAWEAVLR RLGATPQVRK ASAQDLAALR RELANAGRLD DTDLQTLAKA RQLIADAAAV
GASDIHILVR EDHTEVQIRI KGDLWTVASM SMRREEGERL TRSMYSGLAT IKEDSYKALN
FQNAQITGEA LPGTGLTSVR IIRGPSFPVE SGGGFLVARL QYRDLAAQSE GSPEVAKRLD
LCTPKAPPGA FRLGEMGYTP LQVELVSRLM HRPMGAVIVT GPTGSGKTTT LYEYTRERAR
LLPHDRLITI EDPTEYPMNW AIQLVTDSKS FPQMLTKTLR MDPDVVLLGE IRDADAGEAT
LQAAATGHQV PTTLHVTDPF ETFTRLMGMD HVRLSLEIIC NHNLIIGLIA QRIVQMLCPH
CSVPLDQASE QLPAYMLRAL HTWGDLSGVR VRGTGCPHCD GKGIAGEQAV AEVVVTSEAL
MQDCIEHGVL VARRNHRRRA GSDKPMIAHA IDLVLAGRLD PRDAQRRVDA IPMRDEIDLP
PDETSEVTS
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