| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_5012 |
|---|
| Symbol | |
|---|
| ID | 6289897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010683 |
|---|
| Strand | - |
|---|
| Start bp | 58869 |
|---|
| End bp | 59780 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642627406 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001901372 |
|---|
| Protein GI | 187930886 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 0.155851 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAAGA CCTTCATTCG CAATGACATC GAGGTGCGCG TATTTGCTGC CCCCAAGGCA
CTCGAACCCG AAACCCGGAA GCAGTACGAA GAACTCAGCT TGACCTCCGC TGAGGTGAAT
GCAGTCAAGG CCTCGCGTAT TGCCCGCACG GCGAAGCGCG CGGCCGCAGC GCTCGCGCTC
TGCACGTCAG CTTCGGCATT CGCCGGCAGC GTGGCTGGCT TCGGCGGCGC GACCGAGATT
ACGCAGTTGC TCAACAACGC CGAACTGGTG TCCTCGGTTG CCCAGCAAGC CCAGATGGTC
GAGCAGAACA TCCAGGCGCA AATCACCCGG CTGCAAAACC TCGCCCAGGT GCCGGGCGAG
CTCATCAACG AGACCATCGC GCCCTACACC CAGCAGCTCG ACAACTTCCG GTCCCTCTAC
TCGGCCGTGA CGGACCTGCA ACAAGCGGCC CAGTCCACCA GCCAGTTGTT CAGCAATGCC
ATGTCGGACA TGAGCTCGGC CAACTTGAAG CCGTCGCAGT GGCTGTCGGC GCTGTCGTCA
CTCGCGAAAT CGCAAGGCGG CGTGTACCGG GCACAACTCA ACCAGGACTT GAATGCCATC
AGCTCGCTGG CCAAACGTGC TCAGAACCTG CAAAGCATCC AATCCAAGAT CCCAGGCGTC
ACCGGCAACG TTCAGGGGCT GCAGATGCTG AATCAGCAAA CCAACGTCCT GGCCGGCGAA
ATGATCGATC TGCATGCCCT CATGCAGCGA CAAGTCGCCA TGCAGATGCA AGACAAGGCG
GACCAGTCGC AGAACCGCGA CAACGTGGCA CAGCTGCTCA AAGCTCGCTC GGCACAGGCT
GCGGACATCA ATACGAAGGA ACAAACCATG ATCCAGAACG CCCCGGCATT CCAACTGCCG
CGCGATCAAT AA
|
|---|
| Protein sequence | MHKTFIRNDI EVRVFAAPKA LEPETRKQYE ELSLTSAEVN AVKASRIART AKRAAAALAL
CTSASAFAGS VAGFGGATEI TQLLNNAELV SSVAQQAQMV EQNIQAQITR LQNLAQVPGE
LINETIAPYT QQLDNFRSLY SAVTDLQQAA QSTSQLFSNA MSDMSSANLK PSQWLSALSS
LAKSQGGVYR AQLNQDLNAI SSLAKRAQNL QSIQSKIPGV TGNVQGLQML NQQTNVLAGE
MIDLHALMQR QVAMQMQDKA DQSQNRDNVA QLLKARSAQA ADINTKEQTM IQNAPAFQLP
RDQ
|
|---|
| |