Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4986 |
Symbol | |
ID | 6289899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010683 |
Strand | - |
Start bp | 37498 |
End bp | 38652 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642627381 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001901347 |
Protein GI | 187930861 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00839264 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTGGGGAA TCGGGAGCCA GAATCGCTCG GAAGCCGCGC TCGCTCCATC GTACACAGGC GCGCCCGTCG CTGTGCCTGC GTCGCCGTCG CGTGATGGCC AAGCCGTCAC TTTGAGCCAG GGCCAATTGC AGTACATCAA GGTCGCACCT GTGGAGCTGC GTGCATTCGC CAGCCGGCGT GAAGCCGCGG GCAATGTCGA TTTCAACGAG GACCACGCGG TGCAGGTCTT CACGTCATAC CAGGGCAAGA TCCGCAACAC GTATGCCAAG GTGGGCGACA CCGTTGCCAA GGGCAAGCCG CTGTTTGATA TCGAGAGCCC CGATCTGGTG CAGGCAGAAT CCACGCTGAT CTCCACTGCT GGCACGCGCA AGCTGACGAC CGATGCGCTG GCCCGTGCGC GCCAGTTGTA TGAGATTCAG GGCTTGGCAC AGAAGGATCT GGACCAGGCT ATCTCCGACC AGCAAGCCGC TGAGGCTGCC TACAAGGCCG CGCGTGAAGC CCTGGCGGTA TTTGGCAAGA CACCCGCGCA GATGGACCAG ATCGTCCAGA CGCGCAAGAC CGATTCGCTG CTGACAGTGG TCAGTCCGAT CTCGGGTCAG GTGACTGCGC GCAGCGCCCA GCCGGGCTTG CTCTTGCAAC CGGGCAACGG CACGGCGCCA TTCACGGTGG CTGACGTGTC AACCATGTGG ATGCAGGCCT TTGTGCCGGA AGCCGACGTG CCGCTTCTGC ATGTTGGACA GCCTGTCAAG ATTCACGTCA TGGCATTCCC CGGCCGGGTC TTCAACGGCA AGATCACCAC CGTGGGCGCG TCGGTCGACG CCAATACGCA CCGTATCCTG GTGCGCTCGG AAATCGACGA CCCTAAGCAC GAATTGCGCC CCGGCATGTT CACCTCGTTC GACATCACCA CCGGCGCGCC CATCCAATCT CCAGCATTGG CGATGGACGG CCTAGTGCGC GAGGGTGACG GCACCATGAC CGCCTGGGTC ACCACCGACC GCAAGCGCTT TGCGCGGCGC GTGATCAAGC TCGGCCTTGA GCAGGACGGC TTCGTGCAGA TCCTTGAGGG TCTGAACGCC GGCGAACTGG TCGCCAATGA GGGTGCGTTG TACCTGAGCA CGGCTGCTTC CGGCAGCGTC AATAGCGCTG ACTGA
|
Protein sequence | MWGIGSQNRS EAALAPSYTG APVAVPASPS RDGQAVTLSQ GQLQYIKVAP VELRAFASRR EAAGNVDFNE DHAVQVFTSY QGKIRNTYAK VGDTVAKGKP LFDIESPDLV QAESTLISTA GTRKLTTDAL ARARQLYEIQ GLAQKDLDQA ISDQQAAEAA YKAAREALAV FGKTPAQMDQ IVQTRKTDSL LTVVSPISGQ VTARSAQPGL LLQPGNGTAP FTVADVSTMW MQAFVPEADV PLLHVGQPVK IHVMAFPGRV FNGKITTVGA SVDANTHRIL VRSEIDDPKH ELRPGMFTSF DITTGAPIQS PALAMDGLVR EGDGTMTAWV TTDRKRFARR VIKLGLEQDG FVQILEGLNA GELVANEGAL YLSTAASGSV NSAD
|
| |