| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4985 |
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| Symbol | |
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| ID | 6289930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010683 |
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| Strand | - |
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| Start bp | 34318 |
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| End bp | 37485 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642627380 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_001901346 |
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| Protein GI | 187930860 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00799341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCTCAAAG CGATTCTCAA GCTGTCGCTG CTGCGACGGC CGCTGATCCT GTTGTTCCTG
CTGGCGTTCG TGGCAGCAGG GTTGTTCGCG TACTCCAAGC TGAATATCGA GGCGTACCCC
AACCCTGCGC CCGTTATTCT CGAAATTACC GCACAAACGC CGGGCCTATC GGCCGAAGAA
ATGGAGCGGT ACTACACGGT GCCAATGGAA ATCGGCTTGG CCGCGACACC CGGTGTGGAG
AATATCCGCT CCACGTCGTT CTACGGTCTG TCGTTCGTGC GCGTGACCTT CAAGTACGGG
ATTGACTACT ACTTTGCTTA CACGCAGGCG GCACTTGCCC TCCAGCAGAA CGTCAGCTTG
CCCAATAACG TGCAACCGCA GATTCAGGCG TCCAGCCTGG TCGGCGAGGT GGTGCGCTAT
CAGTTGAAAG GACCGCCCCA CTTTGGGCTG ACCAACCTGC GAACCTTGCA GGATTGGGTA
TTGCAGCGCC GCCTGAAGAC CGTACCGGGC GTGGCCCAGG TGGTCAGCTG GGGAGGCACG
ACCAAGGAGT ACGACGTCGA GGTCGACCCA AAGAAGCTGG AAGCCTATGG CGTCACCCTG
CCGCAGATGA TGACGGCGCT GGGCAATGCC AACATCAACG TCGGCGGGCG CACGATCAAT
TTTGGGCAGC AGTCCGTCAA CATCCGCGGC GTGGGTCTCA TCCAAGACGT GAAGGACATC
GACAAGATCG TCCTCACGCA GACCAACGGG GTGCCCGTGC AGGTCAAGGA TGTTGCGAAG
ACGAAGATCG GCTTCGCGCC CCGTCTGGGC ATTGCCGGCC GTGACAACGA AAGCGACGTC
GTCACCGCCA TCGTGGTGAT GAACCGCACC ATGCAGACCA ACGACGTGGT GGCGCGCGTC
AAGGCAGAGC TGGACAAGAT CAATGCCGAT GGCACGCTGC CGGCGGGTGT GAAGGTCGAG
CGCTACTACG ATCGCTCGGA GCTCGTCTCC GTCACCACGC ATACGGTCAT GCACGCGCTG
CTGTTTGGCT GCCTGCTGGT GTTCTTTATT CAATGGATAT TTCTGGGCGA TCTGCGCAGC
GCCATCATTG TCAGCGCGAA CATTCCGTTT GCGCTGTTCT TCAGCATACT GATCCTGCTG
CTGACGGGGG AGTCCGCCAA CCTGCTCTCG GTCGGGGCGG TGGACTTCGG GATCATCGTG
GATTCATCCG TCATCCTGGT GGAGAACATC TTTCGCAACT TCCAGATGCC GGCCGCAGAG
CAGACGCGCC TGCTGATGAG CCGTGACGCG AAGATGCTTG GATTCCGCGT GCCCGAACGC
CTGCGCATGA TTTTCGTCAG TGCCTTGCAG GTTGATCGCG CGGTGTTCTT CTCGGCGCTC
ATAACGGTGG CGGCGTTCGT TCCCCTGTTC ACCATGCAGG GGGTGGAAGG TCAGATCTTC
GGCCCCATGG CGCGTACCTA CGGCTATGCA CTGGCCGGCG CACTGATCGC CACGTTCACG
GTCACTCCAG CATTGTGCTC GTACCTGCTG CCCAAGAAGA TTGAAGAGAC GGAAACTTGG
CTCGTCCGCA TGTTGCATAA GGCTTATCAG CCTGCGCTGA CGTGGTCGCT ATCCAACCGG
CGCATTGCCG TGACGATCGG TGCGGTCGTG CTTGCGGCAA CCGCGGCACT TATGCCTCTG
CTGGGCACCG AGTTCCTGCC CGCCCTTGAA GAAGGCAACC TGTGGATCCG GCTGACCATG
CCGCAAACGG CCTCGCTGGA ATCCGGCGTG GTACCGGTCT CGCGCATGCG CCAGATCCTG
CTCAAGCACC CCGAGGTGCG CACGGTGGTG TCGGCTCACG GACGCCCTGA CGATGGCAGT
GATGCCGCTG GCTTCTACAA CGCTGAATTC TTCGTACCAC TTAAGCCGTT CGATCAATGG
TCGGCCGGGA TGACCAAGGA GAAGTTGATC GCGCAGATCC AAAAAGAATT CACCAGCGAG
TTCACTGGGG TCGGGCTGAA TTTCTCGCAG TACATTCAGG ACAACGTGGA AGAGGGGTTG
TCTGGCGTGA AGGGGGCCAA CTCGGTCAAG ATCATCGGCC CGGACTTGCA AGTGCTGGAA
AGGTTGGCCG ACCAGGTGCA AAGCGAAATG AGCAAGGTCA AAGGGATCAC AGACCTGGGT
ATCTTTCGTG TGCTGGGTCA ACCGAACCTG AACGTGCGCA TTAACCGGGA GGCGGCCGCG
CGCTATGGGC TGAACACAGG GGACGTGAAC ACCGTGGTGC AGGCTGCCTT GTCGGGCTCG
CAGGCCACCA CCATCCTGGA AGGTGATCGG CAGTTTGCCC TGACGGTGCG GCTGGCCCCG
GAGTACCGCG CCACTATCGA TGCGGTGCGC AACATCCGCG TCGCCTACAC AAACGCTAAC
GGCGGCAACT CATACATTCC GCTATCGGCC CTGGCTGATA TCACGCTGGA TACGGGTGCG
TCGTACATCT ATCACGAGAA GAATGCCCGC TATATTCCGG TCAAGTTCAG CGTGCGTGGG
CGCGATCTGG GTGGCACGGT GGAAGAAGCA CAGCAACGCA TCGCCCAGCA TGTCAAGCTG
CCGCAGGGTT ACCGCATTGA ATGGGCGGGT GAATTTGAAG AACTGGAGCA AGCCAAGCAG
CGGCTGGCGG TCATGGTGCC GATCAGCATT CTGTTGATCC TGGTGCTGCT CTATGGGCTG
TTCAATTCGC TGCGCGATAG TCTGATGGCG CTGGCCGGGA TTCCATTTGC GATTACCGGT
GGGGTGGCAG CGCTGTTCCT GACGGGGTTG GACTTCAGCG TCTCGGCGGC AATCGGCTTT
GTCTCGTTGT TTGGGGTGTC CGTGATGGAC GGTATTCTGA TGATCACCTA CTACAACGAC
CTGCGCCGAG AGCGCGGCCT CCAGCCCACG GAAGCCATGT TCCATGCGGC GCAACAGCGG
ATGCGGCCCA TGCTGATGAC CGCGCTGTCG GCATGTATCG GCTTGTTCCC GGCGGCTATT
TCCACGGGCA TCGGCAGCCA GGTGCAGCGG CCACTGGCCA CCGTGGTCGT GGGCGGCATG
CTTGTGGGCC CGTTGATGCT GCTGGTGATC GTGCCTGCGT TGCGGATGGT CTTCCTCGGC
AAGGAGCCGC CGTCTGAAGA CCCGCCCCTT GAGGAAGCGC CGGTCTGA
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| Protein sequence | MLKAILKLSL LRRPLILLFL LAFVAAGLFA YSKLNIEAYP NPAPVILEIT AQTPGLSAEE
MERYYTVPME IGLAATPGVE NIRSTSFYGL SFVRVTFKYG IDYYFAYTQA ALALQQNVSL
PNNVQPQIQA SSLVGEVVRY QLKGPPHFGL TNLRTLQDWV LQRRLKTVPG VAQVVSWGGT
TKEYDVEVDP KKLEAYGVTL PQMMTALGNA NINVGGRTIN FGQQSVNIRG VGLIQDVKDI
DKIVLTQTNG VPVQVKDVAK TKIGFAPRLG IAGRDNESDV VTAIVVMNRT MQTNDVVARV
KAELDKINAD GTLPAGVKVE RYYDRSELVS VTTHTVMHAL LFGCLLVFFI QWIFLGDLRS
AIIVSANIPF ALFFSILILL LTGESANLLS VGAVDFGIIV DSSVILVENI FRNFQMPAAE
QTRLLMSRDA KMLGFRVPER LRMIFVSALQ VDRAVFFSAL ITVAAFVPLF TMQGVEGQIF
GPMARTYGYA LAGALIATFT VTPALCSYLL PKKIEETETW LVRMLHKAYQ PALTWSLSNR
RIAVTIGAVV LAATAALMPL LGTEFLPALE EGNLWIRLTM PQTASLESGV VPVSRMRQIL
LKHPEVRTVV SAHGRPDDGS DAAGFYNAEF FVPLKPFDQW SAGMTKEKLI AQIQKEFTSE
FTGVGLNFSQ YIQDNVEEGL SGVKGANSVK IIGPDLQVLE RLADQVQSEM SKVKGITDLG
IFRVLGQPNL NVRINREAAA RYGLNTGDVN TVVQAALSGS QATTILEGDR QFALTVRLAP
EYRATIDAVR NIRVAYTNAN GGNSYIPLSA LADITLDTGA SYIYHEKNAR YIPVKFSVRG
RDLGGTVEEA QQRIAQHVKL PQGYRIEWAG EFEELEQAKQ RLAVMVPISI LLILVLLYGL
FNSLRDSLMA LAGIPFAITG GVAALFLTGL DFSVSAAIGF VSLFGVSVMD GILMITYYND
LRRERGLQPT EAMFHAAQQR MRPMLMTALS ACIGLFPAAI STGIGSQVQR PLATVVVGGM
LVGPLMLLVI VPALRMVFLG KEPPSEDPPL EEAPV
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