| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4977 |
|---|
| Symbol | |
|---|
| ID | 6289922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010683 |
|---|
| Strand | + |
|---|
| Start bp | 24457 |
|---|
| End bp | 26136 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642627372 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001901338 |
|---|
| Protein GI | 187930852 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0087225 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGCA TAAACGCGTT TCCTAAAAGC GGGGACCTTT GGCGCGTGGA CTGGTTCGGC
CCCATCGCCT TTCCCGATCG CATGTTGCGG CGGCGCCATC CATCCGTGCT GGTCTCGCTT
TCCAAGGCCA ACGCCCCTGA TGGTGCCGGT CGCTTATCGC CCCTATCGCT TCACAAAGCG
GAAAGGCAAA CAACCCGATG CTGGGTCTCA GTCGGAACCA CAATGCTCTT GCGCATCGGT
GACCTGTGGC GCGAGCAAGG CTTGGAATCC CGTGCGGCTG ACGAAGAGTT GCTCTGCGAA
GACCTGGCGA TCAGCCGAGA CACCTGCGAT CTCGTAAAAG CCGGATCGAG CTTCGACGAA
GGCTGTTTCA TGCTGCCGCT CCACGAGCAT GCGGGACATC GCGAAAACAC TCACTCCTAT
TGCGTCCGGG TCGCGCTACC AAATGGAAAG CTCCTCGTCG TACCGTGCAT GGAGTTAATC
CGCTTCTACT TTGGCTCGTC CAGTGAACTC CTCAACCGAC TGTTTGTGCC CCCACTCCAG
AGGGAGAATC TCTACACAGG CATAACAATC GATCGGCGCA ACCGGATGAC GCTGCAGCTT
GCCGACCGCA TTCCGCGTGC AAGCGCCGAG GACATCGCCC GAATCGCCGG AAGCCGACTC
GCCTGGCGTG CGGCCGCGAT GATCGGTACC TCCTGTGTCA GTGCCGCGCA GGCGCGCCAG
GATATCTACC CGCAGACCCT GTTCCCGTTC GAAGGAACGA CAACACTTCG GGCCGCTGGG
AAGTGGCTGT CGCGAGGCGA CGATCCAAAA GGGACGTTCC TCGTCTACCA ACTCCTGAGT
TGCTCGCACC CGTTTCCTTT CAAGTCATTG CAATTCCGCG TGACGGGCGC AAAGAAAGCT
CGCAGCAGCG GCATGGCGCC CGAGACCCCA CCACCGGAAG CCGCGTCAAC GGCCCGGAAA
GCCCAGGAAC CTTCCAAGAT CAGCCTGGAG GAACACGACC CTTCATCGCA GCTTGCTCCA
GCTACGATGC CCATGCGCGG CAATCGACGA TTTGTCGACC TGGAGAACAA GTGGGTCTTC
GCAGACAAAA CCATTGCCGG GAAAACACCT CGTGCCAGCG CCTCGTCTGG TGAACCGATC
AGCGAGCATG CGATCGGCGA ACCGGGCTCC ACGAAGCGCA TCCGAGAAGC GCAGATCGTC
GAGGGCGACA ACGAAGTCCC AGACCCACCC GCATTCCTGG AGCATGCTGT CAAAGCGCTA
TCCACACTGG ACAACGCTTC CGTAAGAGTC CTGACAGCGA GCCGCGACGA CGGGTGGTCC
GTTCCCGTGC CGCTGATCGC GGATGAGGAC GGAGTACTTG ACGAGCATCT CCTGGTTCCG
CAGGACATGC GCCGCCTGAA GCGCGTGGCC GCCTTCGCAG TTTCCTCAAA GGAAGCTTCC
ACGTTGTTCA TGGTTCACGA AGCGAGTCCA GCCATATCGT TTGCTGTCCC GCTGGAAGAC
AAGAGTGACG AGGCAATACA GCGCGCAATT CAGGCAGCGA CGGGAGCATT CATCGCCGTC
CAAAACGGCA CCGACTATCA CGTAGTGGCT TTGGAGCACA CACTGGCAAA CGCTCCCGAC
GAGCTGCGCT CCTGGATCTC AATGCAACTC AACCACGCGG CCATCGCGTA CCTTCGATGA
|
|---|
| Protein sequence | MVRINAFPKS GDLWRVDWFG PIAFPDRMLR RRHPSVLVSL SKANAPDGAG RLSPLSLHKA
ERQTTRCWVS VGTTMLLRIG DLWREQGLES RAADEELLCE DLAISRDTCD LVKAGSSFDE
GCFMLPLHEH AGHRENTHSY CVRVALPNGK LLVVPCMELI RFYFGSSSEL LNRLFVPPLQ
RENLYTGITI DRRNRMTLQL ADRIPRASAE DIARIAGSRL AWRAAAMIGT SCVSAAQARQ
DIYPQTLFPF EGTTTLRAAG KWLSRGDDPK GTFLVYQLLS CSHPFPFKSL QFRVTGAKKA
RSSGMAPETP PPEAASTARK AQEPSKISLE EHDPSSQLAP ATMPMRGNRR FVDLENKWVF
ADKTIAGKTP RASASSGEPI SEHAIGEPGS TKRIREAQIV EGDNEVPDPP AFLEHAVKAL
STLDNASVRV LTASRDDGWS VPVPLIADED GVLDEHLLVP QDMRRLKRVA AFAVSSKEAS
TLFMVHEASP AISFAVPLED KSDEAIQRAI QAATGAFIAV QNGTDYHVVA LEHTLANAPD
ELRSWISMQL NHAAIAYLR
|
|---|
| |