| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4936 |
|---|
| Symbol | |
|---|
| ID | 6285072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 1288862 |
|---|
| End bp | 1290253 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642619410 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_001893445 |
|---|
| Protein GI | 187927100 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.105521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGCA GTATCGAGCG CCCCGATCGG CGCGCGGTCG CCAGAAGTCT CCCCTGCTTC
GCGAGCCCAA CCGGCTCATA CCGAACCGGA AGCGAGCGTG ATGTGCGACA AAGTCACTTT
GCCCGGCTGC TATCCGGTCT GATCGGTTTG CTGGTTCTGT CCGGTTGCCA CCAGCAAGAC
GCACCCATCA CCAGTTCGCC CCCGCCGCAC CGAACCAGCA TTACGGCATT GATCTGGGCA
CCGGACTGGC CCGAGCAGAT GCTTCAGATT GCTGCCGAGT TCAGCAAGCT CAATCCCGAT
GTGCAGGTGG ACGTTCAATT CATGATCGGC AATTCGGTCG AAGAGAACAT CAAACCCCGC
GTCGCTGCTG GCACGCTGCC CGATCTTTTG AGCGTCAACC CAAATGCTTA TTCGGCCGAA
CTGGCCGACC AGCGCGTCCT CGCCGATGTC AGCCAGACAT CGGCGTGGAC GAACATGCTC
GCCCCGCTCA AGCGGGACTG GACCAGCCGC CGCGGCAAAG GGTTCGGCAT CTCGGGCGGT
GTCGCGACGA CGATGATCTA CTACAACCGC GAGATGTTCG AAAAAGCGGG CATCGACAAG
CTGCCAGCAA ATTTCGACGA GTTCCTGCGC GTTTGCGCGC AACTCAAACG CGCAGGATTC
ACGCCCTTGA TGTTGAACGG CGCATTCCCG AACATGCTCG GAAACGGACC GTTTGCCTCA
GGCTTCGCCA ACAACGTGAT CGCGCACGAG CCGAACTGGA AAAGCAAGAT GGCCGAGGGC
ACGCTGGATC TCGACACCCC CGAGGTCGCC GATATCTTCG CCAGGATGGC GCTGCTGCCG
GAACGTGGCT ACGTCCAGGC GTCGTTCATG GCAACCGGCT ACGACGACGG CATGCGTCTT
TTCAAGGAAG GCAAGGTGGC GATGGCCTTC CAGGGCAGTT GGGCGGCGGG CCTGCTGCTG
CACGGCAATC GCTTTGCGGT CGGCGTGTTC ATCCCGCCAT GGAATAAGCG CGGCGAGCAG
GTGGTGCCCG TGCTCGGCAG CGAGACAGGC TTTGCCGTAT GCGAGACGCC CAACAAGGCC
GCTGCAATGC GCTTTCTGGA ATTCATCGCC GGCAAAGGCT TCCCGATTCT GCAGAGAAAG
CGCCACAACA TCTCCCCGTT TCAGCAACAC GCGGAGACGG CCGTCAGTGA CCCGGAAATC
GCCGACTACA CGAATACGGT CAGCCGCTAT TTGATCACTG CCAGCCCGTA CTATTCGACG
CTGCCTTCAA ACACACTCGA GTCACTGCAT GGGTTGATGC AAGACGTCCT GCTCAAGAAG
ATGTCGCCCA GGCAAGCGGC GAAGCGACTC GACGAATCGG TCAAGAATGA AGCGAAGATG
CACTACAAAT GA
|
|---|
| Protein sequence | MLSSIERPDR RAVARSLPCF ASPTGSYRTG SERDVRQSHF ARLLSGLIGL LVLSGCHQQD
APITSSPPPH RTSITALIWA PDWPEQMLQI AAEFSKLNPD VQVDVQFMIG NSVEENIKPR
VAAGTLPDLL SVNPNAYSAE LADQRVLADV SQTSAWTNML APLKRDWTSR RGKGFGISGG
VATTMIYYNR EMFEKAGIDK LPANFDEFLR VCAQLKRAGF TPLMLNGAFP NMLGNGPFAS
GFANNVIAHE PNWKSKMAEG TLDLDTPEVA DIFARMALLP ERGYVQASFM ATGYDDGMRL
FKEGKVAMAF QGSWAAGLLL HGNRFAVGVF IPPWNKRGEQ VVPVLGSETG FAVCETPNKA
AAMRFLEFIA GKGFPILQRK RHNISPFQQH AETAVSDPEI ADYTNTVSRY LITASPYYST
LPSNTLESLH GLMQDVLLKK MSPRQAAKRL DESVKNEAKM HYK
|
|---|
| |