| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4930 |
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| Symbol | |
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| ID | 6285262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 1282421 |
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| End bp | 1285084 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642619406 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001893441 |
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| Protein GI | 187927096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.221023 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGATGG GGATGGCCTT GGAGCAACCG GATACGTCAG GTCGCACCAT ACGGCGACGG
CTGCGCGCCT GGCTGTCGCC GCTGAACGTT GGTGTCGCGG TATGCCTCGC CGCCATCTGG
TGGTTCACGT TCGACCAGCT CGCACAGGCA CGGGATCGGC TCATCCACAA TGCCGAGATC
CGCACCCGAC TCGAGGCGCA AGCGTTCGGC CAATATTCGC TTGGCAGCAC CCGCCGCCTG
TCGGAGTTTC TTCTGGATCT CCGCGCCAGC TGGCTGGCTG GCCGGGATGT GTTCGAGCGG
GTCATTCACG AGCGCGAAGA GGCGGTGCGC GACCTGACCT CCCAGGTTGC CGTCATCGAC
GCGAACGGCC TGTTGCTCTA CAGCTCCATC GGACCAGTCA GCCAGCCGGT CGACCTGAGC
GAGCGCGAGC ACTTTCGCGT GCACAAGGCG TCAGGCGGAC GCGACGTGCT GTTCATCAGC
GATCCGGTGC AGGGCAAGGT GTCAAAGAAA TGGTCGATCC AGTTCACGCG GCCGATCCTG
AAAGATGGGC AGTTCGCAGG GGTGATGGTG GTGTCCGTCA GCCCCGAGCA GTTCGCCAGC
TTTGCCAACA CCCTCACCGT CGGCACGAAC GGCGTGGCCA GCATCATCAA GGAATCCGGG
CAAGTGATCG CCCGCATGCC CGACCCGACA GCCGGCATCG ACAGCCCGCC GCGCAAACGA
CGCTTCAACG AGCCGGGCGC CCAGGAGTCG GGCAACTATC GCACGGTGTC CGGTACGGAT
GGCGTCGAGC GCCTGCTGGG CTATCACCAC GTGCCCGAGA TCGGCTTGTA CTTCCTCGTG
GGGGAGTCCA TCGCATCGAT CCTGGCGCCT TATGAGGCGT ACCGCCGCAC CGCGCTGGCA
GGGGCCATCG GCTCGACATT GCTCATGGCA CTGCTGTACG CGACGCTGCG CCGGTCCATG
TCCCAGCGCA AGCAGCACAT TGACGAGATG CGCCTGGCCT CGCTCGTGTA CGCGTCCAGC
AGCGAAGCGA TGATGGTCAC GACACTCGAC GGTACCGTCA TCGACGTCAA CCCGGCCTTC
ACGGTCACAA CGGGCTATAC AGCGCAGGAG TTCAAAGGCC AACACAGTGA TGCCATCCGG
TCTGAATGCA ATGACAGCGC CGTGGTCGAC ACCATGCGCA CGGCCGTCAC GACCAAGGGC
ACGTGGAGCG GCGAATACCT GATCCGCCGC AAGGACGGCA CCGAATTTCC GGCGCTGCTC
ACCGTCGACA CGTTTGCCGG CCACAAGCTG GGCGCGCCCA GCCGTGTTGC GCTCATCCAC
GACATCACCG AAAAGAAGCG TGCCGAAGAG GTGATCTGGC GGCAGGCCAA CTTCGATACG
CTGACCGAAC TGCCCAACCG GCACATGTTC TATGCGAAGC TGCGCCAGGA GATCCTGCAT
GCCAGGCAGG CGGCAACCGC CGTGGCGCTG CTGTTCATCG ACCTGGACCG GTTCAAGGAA
GTCAACGACA CGCTCGGCCA CGATCAGGGC GATGTGCTGC TCAAGGAGAT CGCCCGGCGC
ATCTCCGCCA TCGTGCGCGG CACCGACACC GTCGCGCGCC TGGGCGGTGA CGAATTCACC
ATCATCCTGC CCAACCTGCC AGACGCAGGC GCCGCCGCCC CGATCATCCG CAGCCTGCTC
GCGCGCATCG CCACGCCGGT ACAGCTTGGC GAAGAAAGCG TCGAGGTGAC GGCCAGCATC
GGCCTGGCGT TGTATCCGCG CGATGCCGAC AATGCGGAAT CGCTGCTCGT GCGCGCCGAC
CAGGCGATGT TTGCCGCCAA GAGCGCGGGG CGCAACCAGT GGTCCGTCTT CACGCCCGCA
CTACAGCGGG CCGAACAGGA ACGCCTGCGC ATCACCAGCG ACCTGCGCAT CGCCATCGAG
CAGAAGCAGC TGGCGGTGCA TTACCAGCCC ATCGTGGATC TGCGCAGCGG TGCGATCAAC
AAGGCCGAGG CGCTGATTCG CTGGACGCAC CCCGTGCGCG GAGAAATCGA ACCGGCCGAT
TTCATTCCGG TGGCCGAGGA AACCGGCCTG ATCGTCCAGA TCGGCAAATG GGTCTTGAAC
GAAGCACTGA CCGAGGTCAC GCGCTGGCAC ACGGTGCTGG GCAGGCACAT GCAGGTTTCA
GTGAACAAAT CGCCCGTGGA GTTTCGCGCC GCCGGACAAC TGGGCGACTC CTGGGCCGAT
GTGGTGAAGC GCCGGGCGAT TCGGCCAGGC AGCCTGGTCA TTGAGATCAC GGAAGGCGCG
CTGATGGAAG GCAGTGCCGA GGTGGTCGAT CACCTGACCC GCCTGCGCCA GGCCGGCATC
GAGATTGCGC TGGACGATTT CGGCACGGGG TATTCGTCGC TGTCGTACCT CAAGCGCTTC
GACATCGACT ACATCAAGAT CGACCAGTCG TTCGTGCGCA GCCTCGCGCA TGACCCGAAG
GACATCGCGC TGTGCAGCGC CATCGTGAGC ATGGCGCACG CCCTGCGCAT CAAGGTCATT
GCAGAGGGCA TCGAGACCGA GGAGCAGAAG GCGATCCTGG TGGCGGCAGG CTGTGACTAC
GGGCAGGGGC ACCTCTTCTG CCCGCCGGTG CCGCCCGCAG CCTTTGAAGC CTTTGTGGCC
AAAAGCCAGC TTGCCGAAAC CTGA
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| Protein sequence | MGMGMALEQP DTSGRTIRRR LRAWLSPLNV GVAVCLAAIW WFTFDQLAQA RDRLIHNAEI
RTRLEAQAFG QYSLGSTRRL SEFLLDLRAS WLAGRDVFER VIHEREEAVR DLTSQVAVID
ANGLLLYSSI GPVSQPVDLS EREHFRVHKA SGGRDVLFIS DPVQGKVSKK WSIQFTRPIL
KDGQFAGVMV VSVSPEQFAS FANTLTVGTN GVASIIKESG QVIARMPDPT AGIDSPPRKR
RFNEPGAQES GNYRTVSGTD GVERLLGYHH VPEIGLYFLV GESIASILAP YEAYRRTALA
GAIGSTLLMA LLYATLRRSM SQRKQHIDEM RLASLVYASS SEAMMVTTLD GTVIDVNPAF
TVTTGYTAQE FKGQHSDAIR SECNDSAVVD TMRTAVTTKG TWSGEYLIRR KDGTEFPALL
TVDTFAGHKL GAPSRVALIH DITEKKRAEE VIWRQANFDT LTELPNRHMF YAKLRQEILH
ARQAATAVAL LFIDLDRFKE VNDTLGHDQG DVLLKEIARR ISAIVRGTDT VARLGGDEFT
IILPNLPDAG AAAPIIRSLL ARIATPVQLG EESVEVTASI GLALYPRDAD NAESLLVRAD
QAMFAAKSAG RNQWSVFTPA LQRAEQERLR ITSDLRIAIE QKQLAVHYQP IVDLRSGAIN
KAEALIRWTH PVRGEIEPAD FIPVAEETGL IVQIGKWVLN EALTEVTRWH TVLGRHMQVS
VNKSPVEFRA AGQLGDSWAD VVKRRAIRPG SLVIEITEGA LMEGSAEVVD HLTRLRQAGI
EIALDDFGTG YSSLSYLKRF DIDYIKIDQS FVRSLAHDPK DIALCSAIVS MAHALRIKVI
AEGIETEEQK AILVAAGCDY GQGHLFCPPV PPAAFEAFVA KSQLAET
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