Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4913 |
Symbol | |
ID | 6285823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 1264460 |
End bp | 1265467 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642619389 |
Product | D-xylose ABC transporter, periplasmic substrate-binding protein |
Protein accession | YP_001893424 |
Protein GI | 187927079 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00296988 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCCC GCGTACTGAA CACCCTGGCC GCCGCGGCGG TCCTGACCTT CGCCGCCACG TCGGCCCATG CCAGCAAGCA GGCACCGGTC ATCGGCTTCT CGATCGACGA CCTGCGTGTC GAGCGCTGGA CGCACGACCG CGATTACTTT GTTGAATCGG CGAAGAAGCT GGGCGCGACC GTCAACGTGC AGTCGGCCAA CGCCAACGAA GCCAAGCAGA TCGCCCAGAT CGAAAACCTG ATCGCGCAGA ACGTCGACGT GCTCGTGATC GTGCCGTTCA ATTCGAAGGT GCTGGGTAAC GCCATTGCCA GCGCCAAGAA GAAGGGCATC AAGGTGGTGT CGTACGACCG CCTGATCCTG AACGCCGACA TCGACGGTTA TGTCTCGTTC GACAACGAGA AGGTCGGTGA AATGCAAGCC CAGGGCGTGG TCAAGCTGGC GCCCAAGGGC AATTATTTCC TGCTGGGTGG CGCGTCGACC GACAACAATG CCCGCATCCT GCGCGACGGC CAGATGAAGG TGCTCAAGCC GCTGGTCGAC AAGGGCGACA TCAAGATCGT CGGGCAGCAA TGGACGCCGG AGTGGGATCC GTCCAAGGCG CAGAGCATTG TTGAAAACGC GCTGACCGCG AACAACAACA ACATCCAGGG CATCGTCGCC TCCAACGACG GCACGGCGGG CGGCGCGATC CAGGCGCTTG CGGGCCAGAA GCTGGCGGGC AAGGTGCCGG TCTCGGGTCA GGACGCCGAC CTGGCCGGTG TGCGCCGCGT GGCGGAAGGC ACGCAGGCCA TGACGGTATA CAAGCCGATC AAGGTGATCG CCTCGACCGC AGCCGAAATG GCCGTGGATC TGGTCAAGGG CACGCAGCCG AAGTTCAACA CCAAGATCAA CAATGGCAAG AAGGATGTCG ACACCATCCT GCTGACGCCG ACGCTGCTGA CGAAGGACAA CCTGGATACC GTCATCAAGG ACGGCTTCTA CACGCATCAG CAGATTTTCG GCAAGTAA
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Protein sequence | MISRVLNTLA AAAVLTFAAT SAHASKQAPV IGFSIDDLRV ERWTHDRDYF VESAKKLGAT VNVQSANANE AKQIAQIENL IAQNVDVLVI VPFNSKVLGN AIASAKKKGI KVVSYDRLIL NADIDGYVSF DNEKVGEMQA QGVVKLAPKG NYFLLGGAST DNNARILRDG QMKVLKPLVD KGDIKIVGQQ WTPEWDPSKA QSIVENALTA NNNNIQGIVA SNDGTAGGAI QALAGQKLAG KVPVSGQDAD LAGVRRVAEG TQAMTVYKPI KVIASTAAEM AVDLVKGTQP KFNTKINNGK KDVDTILLTP TLLTKDNLDT VIKDGFYTHQ QIFGK
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