| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4466 |
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| Symbol | |
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| ID | 6285692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 782421 |
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| End bp | 784433 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642618945 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001892986 |
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| Protein GI | 187926641 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00396259 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.48891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGT ACGTTACGAC CCCTCGGCCC CGCCTGGGGC ACTCCATGGT GCGAGCCAAT
ATGGCCGGTG CCGGTGCGGC ACTGACCATT GCCGGCTTCC TGCTCATCGT GTTCCAGTTC
ATCGCGCTGC ATGCGGCGCT GGTGCGCGAT GTGCACGTGC AGGCGCGCAT CGTCGGTGCC
AACAGCGTGG CCGCGCTGCT TTTCAATGAC CGCCGCGCGG CAGAAGAAAC GCTGGGCGCT
CTGGAGGCAT CGCCGTCACT GCGCGCTGCT GGCATTTTCA GCGCGCTGCG CAAGCCGCTG
GCGCTGTATC AGCACGGCGA TGCCGCGCCC GTCCGGGCAC CCGATGCCGC CATGCTGCGC
GAGTCGGCTG TATCGACGCT CACCACGCTG GAGGTGGTGG AGCCCGTGGA ATCGGAGCGC
CGCGTGATCG GCTACGTGGT GGTGCGCTCC AGCCTGAGCG AGCTGTACAT GCAACTGCTC
GGCTATGCGG TGCTGACCGT ATCGGTGGGC ATCGGTGCAA TGGGCCTCGC GTATCTGGTG
ATCGCCCGCA TGCGCCGCGC GGTGCTGCAG GCAGAGGCGC ACCTGGACTA CCTGGCCCAC
ATCGATTCGG TGACGGAACT GCCGAACCGG CACGCCTTCA ACGAACGCCT GCAGGTGTCG
CTCAAGCGCG CAGGCCAGAC GGGGGCGGTT GGGCTGCTCC TGCTGGATCT GGACAACTTC
AAGGTCGTCA ATGACACGCT GGGCCACAAC AATGGCGACC GCCTGCTGCG CCAGGTTGCA
CGGCGGCTTA ACGACGTGAT CGAGCAGGCC AACCTGCGCG CCGTGCTGTG CCGCATCGGC
GGAGACGAGT TCGCGGTGAT CGCAGAGTTG TCGGGCCGTG CACAGATTGC CGAGACAGAA
GCAGCAACGC TGGCCGATGG GTTGGCCAAG CGCATTCTTG CCGCGCTGGG GGCGCCGTTT
TCACTCGACC TGCATCAGAT CTACGTCACG GCCAGCGTGG GCGTGAGCCT GTATCCGCAT
GACGCACGTG ACGTGCAGGT GCTCACGCGC AACGCCGACA CGGCGATGTA TCACGCCAAG
AACCACGGCA AGAATGCGGC CGCCAGCTTT ACGTCGGAGA TGGACCAGCA GGCGCGCCGC
CGCCTGCGCG TGGAAGCCGA TCTGCGCCGG GCGCTCGACC GCGAAGAGTT GTTGCTGGCC
TACCAGCCGC AGGTGCGCCT GAGCACCGAC GATGCTCACG ACGCGGTGAT CTCCAGGGCG
AACGTCTACG GCGTGGAAGC ACTGGTGCGC TGGCGCCATC CCGAGATCGG GCTGATTGGC
CCGGGCGAGT TCATCGCCGT GGCGGAAGAA ACCGGGCTGA TCGTGCCGCT TGGCCTGTGG
GTGCTGCGTA CCGCGTGCCA ACAGGCGGTG CGCTGGATGC GCGAAGACGG CGTCACGCTG
CGGGTGGCCG TCAACCTGTC GGCTCGGCAG ACGCGCGACC CGGCGCTCGT GGAAAACGTC
ATGGACGTGC TGCGCGAAAC CGGTATGCCG CCGCATCAGC TCGAGCTCGA AATTACGGAG
AGCGTGCTGA TGGAAGACAT CGAAGCCAAC ATCGCGCTGC TCGAATCCCT GCACGCGGCC
GGCATCAGCC TGTCGATCGA CGATTTCGGC ACCGGGTATT CGTCGCTGGC GTATCTGCAG
CGTTTTCCGA TCCAGAAGCT CAAGATCGAC CGCAGCTTTG TGCAGCGCAT GCCCGGCGAC
GGCGAAGCCA TTGCAGGCGC GGTGATCGCC ATGGCCCACA GCCTGCGCAT GCAGGTGGTG
GCCGAAGGCG TGGAAGACCC CGAGCAGCTC GCGTTGCTGC GCGACGCCGG CTGCGACCTG
GGGCAGGGCT ACCTGTTCTC GCGCCCGCAG CAAGCCGACG CGTTGATGGC CTGGCTCAAC
CGACTGGACA ACGCTGCGGA CAGCGGCACC GCTGCGTATG CCGAAGAGGA GGTGGTGCCG
AGCGCGTCGT TGCCGTCGTC GTTGGCGGGG TAG
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| Protein sequence | MSLYVTTPRP RLGHSMVRAN MAGAGAALTI AGFLLIVFQF IALHAALVRD VHVQARIVGA
NSVAALLFND RRAAEETLGA LEASPSLRAA GIFSALRKPL ALYQHGDAAP VRAPDAAMLR
ESAVSTLTTL EVVEPVESER RVIGYVVVRS SLSELYMQLL GYAVLTVSVG IGAMGLAYLV
IARMRRAVLQ AEAHLDYLAH IDSVTELPNR HAFNERLQVS LKRAGQTGAV GLLLLDLDNF
KVVNDTLGHN NGDRLLRQVA RRLNDVIEQA NLRAVLCRIG GDEFAVIAEL SGRAQIAETE
AATLADGLAK RILAALGAPF SLDLHQIYVT ASVGVSLYPH DARDVQVLTR NADTAMYHAK
NHGKNAAASF TSEMDQQARR RLRVEADLRR ALDREELLLA YQPQVRLSTD DAHDAVISRA
NVYGVEALVR WRHPEIGLIG PGEFIAVAEE TGLIVPLGLW VLRTACQQAV RWMREDGVTL
RVAVNLSARQ TRDPALVENV MDVLRETGMP PHQLELEITE SVLMEDIEAN IALLESLHAA
GISLSIDDFG TGYSSLAYLQ RFPIQKLKID RSFVQRMPGD GEAIAGAVIA MAHSLRMQVV
AEGVEDPEQL ALLRDAGCDL GQGYLFSRPQ QADALMAWLN RLDNAADSGT AAYAEEEVVP
SASLPSSLAG
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