Gene Rpic_4089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4089 
Symbol 
ID6285458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp362801 
End bp363787 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content65% 
IMG OID642618578 
Productaliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein 
Protein accessionYP_001892619 
Protein GI187926274 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID[TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.230626 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAGCC ATCCGCCCCA CACCGCCCCA TCTGGCCGCC GACGCTGGCT GGCCGCATTG 
CTTGGCGCCG GCATGGCGCT GTGCGCAGGC CTGACGCAGG CCGCCGAGCC GACCACGGTG
CGTATCGGCT TTCAGAAAGC CGGACTGCTG GCGGTGCTGA AAGCGCAAGG CGCGCTCGAC
AAACCGCTGG CCGAGCTTGG CTACAAGGTG GAATGGAAGG AATTCCCTGC CGGGCCTCAA
CTGCTGGAGG CGCTCAACAC CGGCAGCATT GAGTTCGGCT ACACCGGCGC GCCGCCGGCT
GTGTTTGCGC AGGCCGCAGG CGCACGCCTT GTCTATGTGG GGGCCGAGCC GGGCGGCAAG
ACCAACGAGG CGCTGTTCGT GCTCGACAGC TCACCCGCGC ACAGCGTGGC TGACCTGAAA
GGCAAGCGCA TCGCGCTGCA AAAGGGCTCC AGCTCCAACT ACCTGCTGGT GCAGCTGCTT
CGTCGCGCCA ACCTCACGGT GCAGGATATT CAGCCGATCT ACCTGCCACC GGCCGAGGCG
CGCGCAGCCT TCGAGAGCGG CGCGGTCGAT GCGTGGGTCG TGTGGGATCC GTATTACGCG
CTGGCACAGA AGGCGTTGAA GACACGCACG CTGGGCGATT TCAGCGAGCT GCCGGTGTTC
AACTTCTACG AAGCCACGCC GGAATTCGTG AACACGCATC CGCGCGCGGT CAATGCCATC
CTGGCCCAGT TGCGCACGGC GGGGCTGTGG GTGAATCAGC ATCCGCAGGA AACCGCCGCC
CTGCTGGCGC CCAAACTCGG CATCGAGCAG CCCGTTGTCG AGACCTGGTT GCGGCGCGTG
CCCTACGGCG TCACGCCGGT CACGCCGCAG ATCGTGGCCT CGCAGCAGCA GATTGCCGAC
CTGTTCCTGC AGCAGAAGCT GATTCCGAAA CCGGTGAACG TACAAAGCGC TGTCTGGCAG
GCGAATTTTC CGGTAGCGGG ATTGTGA
 
Protein sequence
MQSHPPHTAP SGRRRWLAAL LGAGMALCAG LTQAAEPTTV RIGFQKAGLL AVLKAQGALD 
KPLAELGYKV EWKEFPAGPQ LLEALNTGSI EFGYTGAPPA VFAQAAGARL VYVGAEPGGK
TNEALFVLDS SPAHSVADLK GKRIALQKGS SSNYLLVQLL RRANLTVQDI QPIYLPPAEA
RAAFESGAVD AWVVWDPYYA LAQKALKTRT LGDFSELPVF NFYEATPEFV NTHPRAVNAI
LAQLRTAGLW VNQHPQETAA LLAPKLGIEQ PVVETWLRRV PYGVTPVTPQ IVASQQQIAD
LFLQQKLIPK PVNVQSAVWQ ANFPVAGL