| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3950 |
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| Symbol | |
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| ID | 6285176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 207660 |
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| End bp | 211211 |
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| Gene Length | 3552 bp |
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| Protein Length | 1183 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642618441 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001892482 |
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| Protein GI | 187926137 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.543508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.654737 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGAAGC ACGCTTTCTT TCCCACCACG CTGCGCGGCC GCTTGCTTGC CCTGGCCGCG
GTGGCCGCCT TGCCGGCCAT TGTTGTCGCG ATTGCTGGTG TGGCGCTTTA TCGTGACCGG
CTCAATGATC ACCTTGCCCA GCACCTGACC CACGAAACCG AGACTGCCGC TGCGCGCGTC
GGCATGGTGC TGTCCAACGC CAATACGCTG CTCTCGGTGC TCATCGCGGA CGATTCGGCG
CTGCGCATGG AGCGGCAAGA GTGCAGCAGT TTCGTCAACC GCGTCTTTCA TAACCAGAGC
GAACTCGCGA ACCTCGGCAT CATCGACGCG CATCGCAAGC TGGTATGTAC GCCCGATACG
GCGAAGCTTG CCATCGATCT GTCGGACCGA CCGTACATCA ACGAGATCAT GGCGACGGGC
CGACCGTCCC TGTCGACATT TGTGATCGGA CGCGTCTCCG GCCAGGCAGT GTTGATTTCG
GCGCGGCCGA TGGCAGGCAA CGACGGCACC ATCCGGGGCG TGGCGTACGC GGCCGTGCGG
CAGAGCGCGT TGATTGCGGC GGCCGTCGAC GGCATGTCGG AGGCGCCGGT CTACCTCGTA
GATGCGGCGG GCAACGTGTT GTCGACCCAC GGTGCTCTGG AGGCCGCCCA GGTGCCGGCC
ATTGTGCGCG GGCCGCTGGT GGCCGCTGCG GCCCAGCAGC CAGGCGAACC GGTGTTCGTG
GACGACACCG ACGGCGTTCG CCGCGCCTAC GCCGCCATGG TGGTGCCGCA CGCGGCCGGC
GGGCATTTGC GCATCGTGCG CGGCGTGGAC GCTACCGACA TCGTTCGCCA GCAGCGCAAC
GTGACGCTGG CCGGCGGCGG CGCCATCCTG CTGATGGTGG TGATGCTGCT GGCGCTCATA
CAGATGGCGC TGCGGCGGAT GGTCATGCCG CGCATTGATG CGCTGGTGGA TGCGGCCCGC
CACTACGCAA CGGGCGATTT TTCCGCCCGC GTGCCCGAGC ACGGCTCCTC GCGCGATGAA
CTCTCGCTGC TTGAGCGCAC CTTCAACGAA ATGCGTGCCG CCATCCAGCG CCACGACGCC
ACCGTCCACC GCCTGACCGA ACGCTTCCAG CGCGTGGCGC GCGCCACCAA CGACTGGATC
TTCGATTGGG ATATCGCCAC CGGCGAGTCC TGGGCCAACG CCAGCCTGCA TCGGCTGCTT
GGCAGCGACG CGTTGCTGGG CCAGGGCGAC GACGACGGTA CAGGTGGAGG TACCTCGCGC
ACGCTGACAT TCCAACAGTT CGTGCACCCG GACGACGTCG ACGCCTTCGC GCACGAGCTG
CGCACTGTAT TGAATTCGGA CCGCGACAGC TGGCAGCACG TCTGCCGGGT GATCGATGCC
AACCGTGCCA CGCGCACGGT GGAGATTCGC GCAAGCCTTT ATCGTGATCA GGACGGCCGC
GCCGTGCGCA TGGTCGGCGG GGTGACCGAC ATTTCGCAGC GCTCGGCAAT CGAGCAGGAA
CTGCGCAGCA GCGAAGCGAA CCTGCGTGTG GCGGAACAGA TTGCGCTCCT GGGCAGTTGG
CGCTGGGACG TGCTGCGCGA CTCGACCACG TGGTCGTCGG GCATGTACGT GTTGACTGGC
ATGCCGCCGG GTGCGCCGCC GGCCTTTGCG CAGCAGGCGC AGTTCTTTAC CGCTGACAGT
TATAACCGTC TGCGCGAAGC CGCCAGCCGT GCCGTGACCG AAGGTGAGGC GTACTCGCTG
GAGCTGGAGA TGATCCGCCG CGACGGCGAG CACCGCTGGG TGCTTTCGCG CGGCAACATC
GAGCGCAACG ATCGCGATGA GGTCGTCGCC TTGTTCGGCA CCATGCAGGA CATCACAGAT
CGGCGCGAAT CGGACGAGCA ACTGCGGTTG CTGCGCCGCG TGGTCGAATC GGTGCCGTCC
GGCATTACTG TGGCCGACGC ACAGCAGCCC GACTTTCCGA TCGTGTACGT GAACCCCGGC
TTCGAGCGCA TGACGGGCTA TCGCGCAGAG GAAATTCTGG GCCGCAACGC GCGCTTCCTG
CATTCGTCCG AGCCTGGGCA GCCGGCGCTG AACGAAGTGC GAACCGCGCT GCGCGACGAG
AGTGAGATCC GCGTGCTGCT GCGCAATTTC CGCAAGGACG GCCACGCCTT CCTGAATAAC
TTCCTGCTCT CGCCCGTGCG TGATGCCAAG GGTGCGGTCA CGCATTACGT CGGCATTCAG
GACGACGTGA CCGAGCAGGA GATGACGCGC ACGCGCCTGG CGCAGCACGC CACCATCGAT
TCGCTCACGG GCCTGCCCAA CCGCACGCTG CTGGCTGACC GCGTGCAGCA GTCGGTGGAG
ATGGCCGCAC GCCAGCGTAG CCGCTTCTAT GTGGCGCTCG TCAACATTGA CCGTTTCAAG
GTTGTCAACG ACAGCCTTGG CCACCTGCTG GGCGACGAGG TGCTGCGTCG TGTGGCCGAG
CGCCTGCGCG ATGCGGCCGA TACAGTGGAC ACCGTGGCGC GTTTTGGCGG CGACGTGTTT
GCACTGGTGA TCTCGCACGC GGGTTCGCGC GGTGTCGATT TCGGCTTTGA CCTGTTTGCC
GAACCGGTGC GCGTGGAAGG GCACGAGGTG TTCGTGACGG CGAGTATTGG CGTGGCCGAA
TACCCGGCGC ACGGCGCAGA CGCCGATAGC CTCATCCGCC ACGCCGAGAT GGCGATGTAC
TACGCCAAGC AGAACGGCCG CAATCGGCTG GAATTTTTCG CGCCGGAGAT GGACATCGGC
GTGTCGTACC GGCTGAACCT GGAGCACCAG ATTCGTGCTA CGCTGGAGCA GGGGCAGTTC
CGCTTGCTGT ACCAGCCGCA GATCGACACC AAGACCGGCC GCGTGTGCGG GCTGGAAGCG
CTGATCCGCT GGATTCATCC GACACGCGGG TTGCTGCCGC CGGCCGCGTT CATTCCGGTG
GCCGAAGAGA GCGGGCTGAT TGTCGAGATC GGCAACTGGG TCTTGACCGA GGCCGCGCGG
CAGCGCGCCG AGTGGCACAA ACGCGGCCTG GCCGATGACC TGACACTGGC TGTGAACGTG
TCGCCGCTGC AGTTCAAGCG CGGCACCGTG CTGCCGACGC TGCTCAAGCT GCAGCGCCAA
TATGGCCTGG GCTCCGGCTT CCTTGAACTG GAAGTGACCG AGTCGATGCT GATGGAAGGC
ACCGAGCGCA CCATCGAAGA CCTCACGGCC ATTCGACAGC TTGGCGTGCG CATTGCCATC
GACGACTTCG GCACGGGGTA TTCGAGCCTG GCGTATCTGA AGCGCTTGCC GATCGACCTC
ATCAAGATCG ACCGCGCGTT CGTCAAGGAC ATCGATCGAG ATTCCAACGA TGCCGCGATC
TGCACCACCG TCGTGGTGCT GGCCCACAAC CTTGGCGTGA AGGTGTGCGC CGAAGGTGTG
GAAGACGCTG CGCAGTCGGC CTTTCTGGCC TCGCACCAAT GCGACGTGCT GCAGGGCTAT
TACTTCAGCG AGCCGCTGTT GCCCGAGGCG GTGACGGCAT TGCTGGAGCG CAACACGCGC
TTCACGCTGT AA
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| Protein sequence | MPKHAFFPTT LRGRLLALAA VAALPAIVVA IAGVALYRDR LNDHLAQHLT HETETAAARV
GMVLSNANTL LSVLIADDSA LRMERQECSS FVNRVFHNQS ELANLGIIDA HRKLVCTPDT
AKLAIDLSDR PYINEIMATG RPSLSTFVIG RVSGQAVLIS ARPMAGNDGT IRGVAYAAVR
QSALIAAAVD GMSEAPVYLV DAAGNVLSTH GALEAAQVPA IVRGPLVAAA AQQPGEPVFV
DDTDGVRRAY AAMVVPHAAG GHLRIVRGVD ATDIVRQQRN VTLAGGGAIL LMVVMLLALI
QMALRRMVMP RIDALVDAAR HYATGDFSAR VPEHGSSRDE LSLLERTFNE MRAAIQRHDA
TVHRLTERFQ RVARATNDWI FDWDIATGES WANASLHRLL GSDALLGQGD DDGTGGGTSR
TLTFQQFVHP DDVDAFAHEL RTVLNSDRDS WQHVCRVIDA NRATRTVEIR ASLYRDQDGR
AVRMVGGVTD ISQRSAIEQE LRSSEANLRV AEQIALLGSW RWDVLRDSTT WSSGMYVLTG
MPPGAPPAFA QQAQFFTADS YNRLREAASR AVTEGEAYSL ELEMIRRDGE HRWVLSRGNI
ERNDRDEVVA LFGTMQDITD RRESDEQLRL LRRVVESVPS GITVADAQQP DFPIVYVNPG
FERMTGYRAE EILGRNARFL HSSEPGQPAL NEVRTALRDE SEIRVLLRNF RKDGHAFLNN
FLLSPVRDAK GAVTHYVGIQ DDVTEQEMTR TRLAQHATID SLTGLPNRTL LADRVQQSVE
MAARQRSRFY VALVNIDRFK VVNDSLGHLL GDEVLRRVAE RLRDAADTVD TVARFGGDVF
ALVISHAGSR GVDFGFDLFA EPVRVEGHEV FVTASIGVAE YPAHGADADS LIRHAEMAMY
YAKQNGRNRL EFFAPEMDIG VSYRLNLEHQ IRATLEQGQF RLLYQPQIDT KTGRVCGLEA
LIRWIHPTRG LLPPAAFIPV AEESGLIVEI GNWVLTEAAR QRAEWHKRGL ADDLTLAVNV
SPLQFKRGTV LPTLLKLQRQ YGLGSGFLEL EVTESMLMEG TERTIEDLTA IRQLGVRIAI
DDFGTGYSSL AYLKRLPIDL IKIDRAFVKD IDRDSNDAAI CTTVVVLAHN LGVKVCAEGV
EDAAQSAFLA SHQCDVLQGY YFSEPLLPEA VTALLERNTR FTL
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