Gene Rpic_3788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3788 
Symbol 
ID6284874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp30651 
End bp32558 
Gene Length1908 bp 
Protein Length635 aa 
Translation table11 
GC content68% 
IMG OID642618289 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001892331 
Protein GI187925986 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.119976 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCCAT CCGACGGCCA TGCCGACCTT CCCCACCCCG CCCGCGGGCG CGGCTGGCGA 
ATGGCCGTCG CGCTGGCGAT GGCCGCGTGC TGCGCGGCGG CAGGGTGGGG CGCTTACGCC
ATCGCCCTGC AGCGCTACGT TGCCGCGCGC GCCGAAGAGG CCGGCCAGCG CACCACCTTC
TACGCGCAGA GCCTGCGCAG CACACTGGCG CGCTATGAAT CGTTGCCGCG GCTGGCGGCG
CTGGAGCACG TGCTGCACGC CGCATTGCAG GCGAACCATC CGCCGGGCGA TGCCGTTGCG
CGGGGCGCCG CCAATGCCTA CCTGAAAGAG GTTCAGGCGG CTACAGACCT GTCGGCCGCC
TATCTGCTGG ACACGACCGG GCTCACGCTG GCGGCCAGCA ACTGGGATCT GCCGTCTTCC
TTTGTCGGAC AGAACTACGC ATTCCGCCCT TACTTTGCCG AGGCCATGCG CGAAGGCCTC
GGCCGCTTCT ACGGCGTGGG CAACACCACG GGCGAGACGG GCTATTTCCT CGCCGCGCCC
GTGCGCGACG GCAGCAGGCC GATCGGCGCG GTGGTGGTAA AGATCAACCT CGACGCGTTC
GAGGCCACCC TGTCGCGCAG CGGCGATACG GTCTTGCTGG TGGACCGCTA CGGCGTGATC
TTCCTGTCCT CGGTGCCCGC GTTGAAGTAC CGCACGCTCG GCACCCTGAG CGTCGACCAA
CGCGCTGCGC TCGATGCGAC GCGCCAATAT GCACCGCACA CGCTTGTGCC GGTGGATCCC
CGAGCTGGCA GCGTACCCTT TTCTGCGGAC CAGCCACCTC AGGCCGTGCG CGTGGCATTG
CCCGGCAAAT CGGCGTCGGT GCTGCGTGTG CAATACCGCC CGGTCGGCCT GCTCGGCTGG
CAGGTCGCCG TGTTGATCGA CCCACGCGAC GAGCAGCGCA CCGCGCTGGT TGCCGGCGCC
AGTGCATCCT TTGCGATGGC CCTCGCCTTC GCCGTGCTCG TTGCGCTGCG CCTGCGGACG
CGCCGACGCG AAGAACAACG CCGTGCGCGC GCCGCGCTGC GCGAAGTCCA GCGCGACCTG
GAAGCGCGCA TCGCACAGCG CACGGCTGAA CTGACCTCAG CCAACACAGC GCTCGCGAGC
AAGGTGGAGG CACTCGACGC CGCGCAGCGC ATCCTGCGGG AAACGCGCGA CGCTGCGGTG
CAGGCGGGCA AGCTCGCTGT GCTGGGCCAG ATGGCCGCCG GCATCACGCA CGAACTCAAC
CAGCCGCTCA CGGCGCTCAC CACGCTGTCC GACAATGCGA ACCAGCTTGC CGAACGCGGC
CGTATCGACG AGGTTCGCGG CAACCTCACG CACATCAGCC AGCTCGCCAA CCGCATGGGC
CGCATCGTCT CGCACATCAA GGCGTTTTCC CGCAAGGGCG ATGCCGCGCG CGCAGCGGTG
TCGGTGGACG AAGCCATTCG CCAGGCCCTG ATGCTGGTGG AGACACGTCG CCGCCAGGTA
GGCGTGACGG TGACCGCCCC CTCGGTGCCG GCGGATCTTG CCGTCTGGGC CAATGCCGTC
CGGCTGGAAC AGGTGCTGGT AAACCTGATT CGCAACGCCA TCGATGCCTC GGCCGAAACG
CCGCAACCTC GATCCGCCAC CGTGCATGTG AGCGTCGAGC CGGTCGAGAA ATGGGTACGC
ATCACCGTGC GCGACTTCGG CCCCGGCATT CCCGCCGATG TGCTGCCGCG CCTGTTCGAA
CCGTTCTTCA CCACCAAGGT CGACGGGCAG GGGCTCGGTC TGGGGCTGGC GATTTCGCTG
GCGATCATCG AAGATTTCGG CGGACGGCTC GAAGGCCGCA ACGCCGACGA TGAGGGGGGC
GGCGCCGCCT TCATCATCGA GCTTGAACGT GCTGTGAATC CCGCATGA
 
Protein sequence
MPPSDGHADL PHPARGRGWR MAVALAMAAC CAAAGWGAYA IALQRYVAAR AEEAGQRTTF 
YAQSLRSTLA RYESLPRLAA LEHVLHAALQ ANHPPGDAVA RGAANAYLKE VQAATDLSAA
YLLDTTGLTL AASNWDLPSS FVGQNYAFRP YFAEAMREGL GRFYGVGNTT GETGYFLAAP
VRDGSRPIGA VVVKINLDAF EATLSRSGDT VLLVDRYGVI FLSSVPALKY RTLGTLSVDQ
RAALDATRQY APHTLVPVDP RAGSVPFSAD QPPQAVRVAL PGKSASVLRV QYRPVGLLGW
QVAVLIDPRD EQRTALVAGA SASFAMALAF AVLVALRLRT RRREEQRRAR AALREVQRDL
EARIAQRTAE LTSANTALAS KVEALDAAQR ILRETRDAAV QAGKLAVLGQ MAAGITHELN
QPLTALTTLS DNANQLAERG RIDEVRGNLT HISQLANRMG RIVSHIKAFS RKGDAARAAV
SVDEAIRQAL MLVETRRRQV GVTVTAPSVP ADLAVWANAV RLEQVLVNLI RNAIDASAET
PQPRSATVHV SVEPVEKWVR ITVRDFGPGI PADVLPRLFE PFFTTKVDGQ GLGLGLAISL
AIIEDFGGRL EGRNADDEGG GAAFIIELER AVNPA