| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3747 |
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| Symbol | |
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| ID | 6287630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 3931037 |
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| End bp | 3932581 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642627331 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001901297 |
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| Protein GI | 187930810 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.846743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAAA CGATGACCTT TCGAACCCCC GCGCTGCTGC CGGCGCTCCT GCTGGCTGCC
GGCGTGTTGT CCGGCTGCTC GCTGGCGCCC ACCTATGAGC GCCCGGACGC TCCGATAACG
GGCACGTACC CGCAGGCACC GGCCGGCTAT GCCGTGCCGG CGGACTCCGC CAAGCCCGGC
GAGAACGCGC CCCGCGCGAC CGAACTGGGC TGGCGCGAGT TCTTCCCCGA TGCGCGCCTG
CAGAAGCTGA TCGGCCTGGC GCTCGAGAAC AACCGAGACC TGCGCGTGGC CATGCTCAAC
GTCGAGGCCG CGCGTGCGCA GTACCGCCTG CAGATCGCCG ACCTGCTGCC GCCGGTCAAC
GCGTCTGCCA CGTACACGCG CAGCCATACA CCGCCGTCAA TCTCGACCAC CGGCGGCGAC
ATCCACACCA AGCAGTACCA GCTTGGCGTG GGCATCAGCA ATTACCAGGT GAACCTGTTC
AGCGTGGGCG ACGTCACGTC GTCTGCGCGT GCAAGTTATC TGGCGACGGA CGAAGGCCGG
CGTGCCGCGC AGATCAGCCT GATCTCGCAG GTGGCCAAGG CCTACCTGAA CGAGCGCGCC
TACGCCGAAC AGCTCGATCT GGCCCAGCAG ACCCTGAAGG GCCGCGAGGA CTACTACAAG
CTTGCCAAGC AGCGCTTTGA CGTCGGCGCC TCGTCGGCGC TGGATCTGCG TCAGACCGAG
ACGCTGGTGG AATCGGTGCG TGTGTCGGTG GCACAGCTGA CGCGCCAGTA CGCCCAGGCG
ACCAACGCCC TGGTGCTGCT GGTGGGCGCG CCGCTGCCGG CCGATCTGCC CGCGCCGACC
ATGGTGTCGT CGGAGAAGAT CGTGGCCGAC ATTCCGCCGG GTCTGCCGTC GGAGCTCCTG
GAGCAACGTC CGGACATCCG CCAGGCTGAG CAGAAGCTGA TTGCCGCCAA CGCCAACATT
GGCGTGGCGC GGGCAGCGTT CTTCCCGAGC ATCGGGCTGA CGTCAAACGT AGGCACGGCC
AGCGGCGCGC TTCATGACCT GTTCAAGAGT GGGACCCAGT TCTGGTCGTT CGTGCCGAAC
CTGACGCTGC CGATCTTCAA CTGGGGCACC AACATCTTCA ACCTGGACTT GACCAAGACC
AACCAGAAGA TTGCGGTTGC GAACTACGAG AAGACGATCC AGACCGCGTT CCGCGAGGTG
TCCGACGCCC TCGTTGCGCG CGGCACGCTG GAAGAGCAGG TGGCCGCGCA GAAGCGCTTC
CGCGATGCCA CGGCCGATCG CCTGACGCTG TCTGACCAGC GCTATCGCAA CGGCGTGTCG
AGCTTCCTCG ATGTGCTTGA CGCGCAGCGC GATCTGTTCA GCGCCGACCA GACCCTGGTG
CAGACGCGTC TGGCCCGCCT GACCAACGCC ATCGATCTGT ACACGGCGCT GGGCGGCGGG
TTGCAGGAGC ACAGCACCAC CGTGGCCGCA CAGCAGGCAC GGCCGACGGC CGCGCCGGGC
GTTGCGCCCG CCACGCCGGA CATGACGCCG CAGCAATCGA AGTAA
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| Protein sequence | MQKTMTFRTP ALLPALLLAA GVLSGCSLAP TYERPDAPIT GTYPQAPAGY AVPADSAKPG
ENAPRATELG WREFFPDARL QKLIGLALEN NRDLRVAMLN VEAARAQYRL QIADLLPPVN
ASATYTRSHT PPSISTTGGD IHTKQYQLGV GISNYQVNLF SVGDVTSSAR ASYLATDEGR
RAAQISLISQ VAKAYLNERA YAEQLDLAQQ TLKGREDYYK LAKQRFDVGA SSALDLRQTE
TLVESVRVSV AQLTRQYAQA TNALVLLVGA PLPADLPAPT MVSSEKIVAD IPPGLPSELL
EQRPDIRQAE QKLIAANANI GVARAAFFPS IGLTSNVGTA SGALHDLFKS GTQFWSFVPN
LTLPIFNWGT NIFNLDLTKT NQKIAVANYE KTIQTAFREV SDALVARGTL EEQVAAQKRF
RDATADRLTL SDQRYRNGVS SFLDVLDAQR DLFSADQTLV QTRLARLTNA IDLYTALGGG
LQEHSTTVAA QQARPTAAPG VAPATPDMTP QQSK
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