Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3662 |
Symbol | |
ID | 6286287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 3833625 |
End bp | 3835577 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642627245 |
Product | Lytic transglycosylase catalytic |
Protein accession | YP_001901212 |
Protein GI | 187930725 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.874549 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATTGA AGGCCAAGGC AGTATATCGC GCGGTCGCGC TGGCTTTTGC GGGCGTGGTG GGCATGAGTG TGGTCGGCCC GACGCCGCTG GCGGTGGCCG CAAAGCGCCA GGCGCCGCAG GGCATTCCAG CCAATCCGGA TGACGCGTTT GTCGAGCTGC GCAACGCGGC GCGCCGCAAC GATGTGTCGC GCAGCTGGGA GCTGGCCGAC AGCCTCTCCG ATTACCCGAT CCAGTCCTAC GTGCAGTACT TCCGCATCAA GCCGCAGCTG TACGATGCCA GCGGCTATGC GCGTACCGAT GCCCCGGAAG ATGAGATCCG CTCGTTCCTG CAGCGCTACA AGGGCGAGGC GATCGCCGAC CGGCTGCGCA ACGACTGGCT GCTTGTGCTC GGCAAGAAGC GCGATTGGGC CACCTTCGAT GCCGAGTACC CCAACTTTGT GCTGAAGGAC GACGCGCAGG TCGAGTGCTA TGCCCTGCTC TCGCGCGCGA TGAAGGGCCA GAACGTGGCA GCCGATGCAC GGAACACGCT GTCGGATCCC AAGGGCTATG GCGAAGGGTG TGTCGACCTG ATCGGCTATC TGGCGCAGTC CAAGCAGTTC ACCCGTGCGG ATGTGGCCTT TGCGGCGCGG CTGTCGCTGG AGCAGAACCT CGTCACGCAG GCGTCGCGCA TTGCCGCGCT GCTGCCCGAC GGCGATCGCG TGGACAACGA TACGCTGGCC AACGTGACAC GCATGGCGCG CAACGATCCG TCGCAGGCGA CGGCGTATCT GTTGGCGCAA ACCGGCAGCC TGTCGCGCGA AGAGCAAGGC GCGGGCTGGG GCGTCATCGG CCAGTACGCC GCCAAGAAGC AGACGCCGGA TGCGCTGGAC GCCTACCGTC GCCAGCTGAC GCTCGGCGGC GATGCCTACC TCTCCGACGA GTCGCAGGAG TGGCGCGTGC GCGCGGCCCT GCGCGCGGGG GATTGGAAGA TGGTGCGTCA GGCCGTTGAA AAAATGCGTC CCAGCCTGCG CGATCGAGAC CCCGCCTGGA CGTACTGGTA TGGCCGTGCG CTCAAGGCCG ACAATCGCAA CGATGAAGCT CGCCAGCAGT TCCAGTCGAT TGCCGGCCAG TTCAACTTCT ATGGCCAGTT GGCGCAGGAA GAACTCGGTC AGCGCATCAC CGTGCCGCCC CGCACGACCG TGGCCGACGC CGAGATCGAC GTGATGGGCC GCAACCACCC GGGCTTTGGG CGTGCCAAGA AGCTGTACGA CCTGAATCTG CGCTTCGAAG GCAACCGCGA GTGGAACTGG GAGCTGCGCA ACATGAGCGA CCGCGAGTTG CTGGCCGCAG CCGAATATGG CCGCAAGCTC GGCCTGCTCG ATCGCACCGT CAATTCGGCG GACAAGACCA AGACTGAGCA CGATTTCTCG CTGCGCTTCC CGACGCCGTA CCTCAATGTG GTCCAGCGCA ACGCCGATGC GGTGGGGTTG GACATTGCCT GGGCCTACGG CCTGATCCGC CAGGAATCCC GCTTCATCAT GGACGCACGT TCGTCGGTGG GTGCCTCGGG CCTGATGCAG GTGATGCCGG AAACCGCCAA GCACATTGCC AAGAAGATTG GCCTGCCGGG GTTCCGCGTT TCGCAGATGA GCGACATCGA TACCAACGTG CTGCTGGGTA CGGCCTACCT GTCGATGATC CTGACCAACC TGGACAGTTC GGTCACGCTG GCGACTGCCG GCTACAACGC GGGCCCAGGC CGCCCGAAAC GCTGGCGCTC GACGCTCGCG CGCCCGGTGG AAGGCGCGAT CTTCGCCGAG ACGATTCCGT TCAACGAGAC GCGCACGTAT GTGAAAAACG TGCTGTCGAA CGCGACGTAC TACAGCGCAT TGCTGACCGG TCGCCCGCAG TCCTTGAAGG ACCGCCTGGG CAAGGTGGTG CCGGAATCCG TGACGCCGGA CGATCTGCCG TAA
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Protein sequence | MTLKAKAVYR AVALAFAGVV GMSVVGPTPL AVAAKRQAPQ GIPANPDDAF VELRNAARRN DVSRSWELAD SLSDYPIQSY VQYFRIKPQL YDASGYARTD APEDEIRSFL QRYKGEAIAD RLRNDWLLVL GKKRDWATFD AEYPNFVLKD DAQVECYALL SRAMKGQNVA ADARNTLSDP KGYGEGCVDL IGYLAQSKQF TRADVAFAAR LSLEQNLVTQ ASRIAALLPD GDRVDNDTLA NVTRMARNDP SQATAYLLAQ TGSLSREEQG AGWGVIGQYA AKKQTPDALD AYRRQLTLGG DAYLSDESQE WRVRAALRAG DWKMVRQAVE KMRPSLRDRD PAWTYWYGRA LKADNRNDEA RQQFQSIAGQ FNFYGQLAQE ELGQRITVPP RTTVADAEID VMGRNHPGFG RAKKLYDLNL RFEGNREWNW ELRNMSDREL LAAAEYGRKL GLLDRTVNSA DKTKTEHDFS LRFPTPYLNV VQRNADAVGL DIAWAYGLIR QESRFIMDAR SSVGASGLMQ VMPETAKHIA KKIGLPGFRV SQMSDIDTNV LLGTAYLSMI LTNLDSSVTL ATAGYNAGPG RPKRWRSTLA RPVEGAIFAE TIPFNETRTY VKNVLSNATY YSALLTGRPQ SLKDRLGKVV PESVTPDDLP
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