Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3642 |
Symbol | |
ID | 6288027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 3812645 |
End bp | 3814552 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642627226 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001901193 |
Protein GI | 187930706 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCAAG CCAAAAACGC CCCCGCCGCA TCGTTCGACT CGCTGCAGTC CGAGCTCGAC CAGAAGTTCG CCTATCCGGC CTCCAGCAAG ACGTACATCG TCGGCAGCCG CCCGGACATC CGCGTGCCGA TGCGCACCAT CAAGCAGACC GCCACGCGCA CCGACAAGGG CGAGATGCTG AACCCGCCGG TGCCGGTGTA CGACACGTCG GGCCCGTACT CCGATCCCGA TGTGCACATC GACCTGCAGG CGGGCCTCGC CCCGCTGCGC GCCAAGTGGA TCGACGAGCG TGGCGATACG GAAATCCTCT CGGGCCTGTC GTCCGAATAC GGCCAGACGC GCGCCAACGA CCCGGCCACG GCGCACCTGC GCTTCTCGCA CATCTCCAAG CCGCGCCGCG CCAAGGCCGG CGCCAACGTG AGCCAGATGC ACTACGCGCG CCGCGGCATC ATCACGCCCG AGATGGAATA CGTCGCGCTG CGCGAATCGC TGAACCTGCA GGCACTGCAA GACAAGCCCG AGTACCGCCA ACTGCTCAAG CAGCATCCGG GCTTCTCGTA CGGCGCGAAC CTGCCGCAGC GCCCGGAAGA CATCACGCCG GAATTCGTCC GTGCCGAAGT CGCCGCGGGC CGCGCGATCA TCCCCGCCAA CATCAACCAT ACCGAGCTGG AGCCGATGGC CATCGGCCGC AACTTCCGCG TGAAGATCAA CGGCAATCTC GGCAACTCGG CGGTCACCTC GTCGCTGGCC GAGGAAGTGG AAAAGATGGT GTGGGCGATC CGCTGGGGCG CCGACACGAT CATGGATTTG TCCACCGGCA AGCACATCCA CGAGACGCGC GAATGGATCC TGCGCAACTC GCCGGTGCCC ATCGGCACGG TGCCCATCTA CCAGGCGCTG GACAAGACCG GCGGCGTGGC TGAAGACCTG ACGTGGGAGA TGTTCCGCGA CACGCTCATC GAGCAAGCCG AGCAAGGCGT GGACTACTTC ACCATCCACG CGGGCGTGCT GCTGCGCTAC GTGCCGCTCA CGGCCGACCG CATCACGGGC ATTGTCTCGC GCGGTGGCTC GATCATGGCC AAGTGGTGCC TCGCGCATCA CAAGGAAAAC TTCCTGTACA CGCACTTCGA CGAGATCTGC GAAATCATGA AGGCGTACGA CGTGTCGTTC AGCCTGGGCG ATGGTCTGCG CCCCGGTTGC ATTGCCGACT CGAACGACGC CGCGCAATTC GGCGAGCTGC ACACGCTGGG CGAGCTCACC AAGAAGGCGT GGGAGCACGA CGTGCAGGTC ATGATCGAAG GCCCGGGCCA CGTGCCGCTG CAGCGCGTGC AGGCCAACAT GGACGAAGAG CTGAAGCACT GCTTCGAAGC CCCGTTCTAT ACGCTGGGCC CGCTTGTGAC CGACATCGCC CCGGGCTACG ACCACATCAC CAGCGGCATC GGCGCGGCCA ACATCGGCTG GTACGGCACG GCCATGCTCT GCTACGTCAC GCCCAAGGAA CACCTGGGCC TGCCGGACAA GGAAGACGTG CGCGAAGGCA TCATCACCTA CAAGATCGCC GCGCATGCAG CCGACCTTGC CAAGGGCTGG CCGGGTGCGC AGCTGCGTGA CAACGCGCTG TCGAAGGCAC GCTTCGAATT CCGCTGGGAA GACCAGTTCA ACCTCGGCCT CGATCCGGAG AAGGCACGCG CCTTCCACGA TGAAACGCTG CCGGCCGAGG GCGCCAAGAT CGCGCACTTC TGTTCGATGT GCGGTCCGAA GTTCTGCTCG ATGAAGATCA CGCAGGAAGT GCGCGACTAC GCGGCCACGC TCGACGCCAA CGCCACCGCC GCCGCAGTTA ACCCAACTGC GGGCATGGAA GAGAAGTCGA TCGAGTTCCG CAAGAGCGGC AGCAAGATCT ACAGCTAA
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Protein sequence | MPQAKNAPAA SFDSLQSELD QKFAYPASSK TYIVGSRPDI RVPMRTIKQT ATRTDKGEML NPPVPVYDTS GPYSDPDVHI DLQAGLAPLR AKWIDERGDT EILSGLSSEY GQTRANDPAT AHLRFSHISK PRRAKAGANV SQMHYARRGI ITPEMEYVAL RESLNLQALQ DKPEYRQLLK QHPGFSYGAN LPQRPEDITP EFVRAEVAAG RAIIPANINH TELEPMAIGR NFRVKINGNL GNSAVTSSLA EEVEKMVWAI RWGADTIMDL STGKHIHETR EWILRNSPVP IGTVPIYQAL DKTGGVAEDL TWEMFRDTLI EQAEQGVDYF TIHAGVLLRY VPLTADRITG IVSRGGSIMA KWCLAHHKEN FLYTHFDEIC EIMKAYDVSF SLGDGLRPGC IADSNDAAQF GELHTLGELT KKAWEHDVQV MIEGPGHVPL QRVQANMDEE LKHCFEAPFY TLGPLVTDIA PGYDHITSGI GAANIGWYGT AMLCYVTPKE HLGLPDKEDV REGIITYKIA AHAADLAKGW PGAQLRDNAL SKARFEFRWE DQFNLGLDPE KARAFHDETL PAEGAKIAHF CSMCGPKFCS MKITQEVRDY AATLDANATA AAVNPTAGME EKSIEFRKSG SKIYS
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