Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3640 |
Symbol | |
ID | 6288025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 3805973 |
End bp | 3810994 |
Gene Length | 5022 bp |
Protein Length | 1673 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642627224 |
Product | outer membrane autotransporter barrel domain protein |
Protein accession | YP_001901191 |
Protein GI | 187930704 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTGC TCACACAAAA CAGCCCGTTT GGCCGGCGTG GGGTTGCCGG ATGGTCGATG TTCCGGCGTC TGGAGGCGCA GGGGCGGGAA TGGCTGCGCC AGGGCCTGCT GGCCGTGCTG GCGATCTGGC TGACGGTGTT GTCGCAAGGA GCGCTCGCCG CTGCCTGCAC CGTCTCATTC TCGACCAACA TGAATGCGCA GAAGTCCTAT GTCTTTACGG CTGCGGACAC GAGCAACTGC GACCCCTTCC TGTCCGGCAT TGCTTACGAT TCTTCCGGCG GTACAAACAG TTCATCCGGC CCGCTCTTTC TTACGGCGAC CGCCCAAGGC GGCAAAGTCG CCATCTACAG CGGTTCGGTA CCGCCATCGG GGGATCCGTA TACCAATGGT TTCGTTTACA CGCCGCCGAG TAACTTCAGC GGCACTGATA CCGCCACGTT CTACACCAGC AATGACAGCG TCACCTGGGT GCCTAACGGT ATCGTGAGCA TTGCTGTAAT CCCAACTGCG CCGACGGTGA CGGGCATTGC GCCGAACACA GGGACGACCG GCGGCGGCAC CTCGGTCAAC ATCAGCGGCA CCAATTTCAC CGTCGCCACG GCCGTCAAGT TTGGCGCGAC CAACGCCACC AACTTCACCG TCAACAGCGC CACGCAGATC ACGGCAACAT CACCGGCGGG CAGTACTGGC GTTGTTGATG TGACGGTGAC CAACGGCGGC GGCACCAGTA CCACCAGCGC GGCTGACCGG TTTACCTACG TGCTGCCGCC AACCGCCGGT CCGACCAGCA TTACCGTGGC GCACGGCAGT ACTAACAACC ACGCTACGGT GGACGTCACC GGTGCAACCA GCGTGGCTGT CGGCACGCAG CCGACCCACG GCACGGCCAC GGTCTCGGGC GGGTCGATCA CCTACACGCC CAACCCGTCG TACTCAGGCA TGGACTCGTT CACCTACACG GCTAGCAATG CGGGCGGCAC GACGGCGCCG GCCACAATCA CCGTCACCGT GTCGAATGCG ACGGTCAACT ACGCGCCGTC CTCACCCGCT GGCGGCACTG TCGGTGCGGC CTACAGCCAG TCACTGGCGT CGGCCAGTGG CGGCACGGCG CCGTACACCT ATACGATCGC GTCCGGCGCG TTGCCGCCAG GGCTGACGCT GACAAGCAAC GGCATGCTAT CGGGTACACC AACCGCCGAT GGCAGCTTCA ACTTTGCGGT AACCGCCACC GACAGCAGTA CGGGCACGGG CCCGTTCTCT GCCACCAGCA GCACGCTGTC GCTGGTGATC GGCACGCCAA CTATTACCGT ATCGCCGGTT TCGTTGACGA ACGCGACGGT GGCTGCGGCT TACAGCCAGA CGATAACGGC CAGCGGTGGC ACAGGGCCAT ACACCTATGC CATCACCTCC GGTGCGCTGC CCGCCGGGCT CACGCTCAGT TCGGGCGGCG TGCTGTCGGG GACGCCCACG GCGGGCGGCA CGTTCAACTT CACCGTGACC ACCACCGACA GCAGCACCGG TACTGGCCCA TATACGGGCA GCCGTACCTA TACGCTGGTC GTCAATGCAC CCACGTTGGC GCTCACCCCG GCATCGGGCA GTCTCAGTGC TTCAACCGGC GTGGCGTACA GCCAGACCTT CACAGGCAGC GGCGGTCTGG CGCCATACAC CTATAGCCTT GCGGTCCATA GCGGGACGAT GCCGACCGGT CTCTCGTTCA ACACCGGAAC CGGCGTGTTG TCCGGTACGC CGACCACCAC GGGCGTGGTC AACTTCTCGG TGACTGCCAC CGACCACGCA ACGGGCGCGG GGCCGTACAG CACGTCTGGC ACCTACACGC TGACCACCTC GGCGCCCACC ATTACCGTGT CGCCCACCAC CCTGAGTGCG GCGACTGTCG GCGCCGCCTA CGGCCAGACT GCCGCGGCCG GCGGGGGTGC CGCGCCTTAC AGCTACGCGC TGACTGCCGG TGCGCTGCCG ACGGGCCTGA GCTTGAACGG CAGCACTGGC GCGATCACTG GTACGCCCAC GGCGGGCGGC ACCTTCAACT TCGCGGTCAC GGCTACTGAT GCCAACAGCT ATACCGGCTC GCGCGCGTAC ACCCTGACGG TCAACGCAGC TACCGTCTCG GTCAGCCCGA GCACGTTGCC GGGCGGCACC ATCGCTACGG CATACAGCCA GACCATGTTG GCCAGCGGCG GCACAGGTCC CTACACGTAT GCCGTCACGG CAGGTTCGCT GCCGACGGGG CTGACGCTGT CCAGCAACGG CACGCTGTCG GGTACGCCCA CGGCGGGTGG GGTGTTCAAC TTCACCGTCA CCGCGACTGA CAGCAGTACC GGAACCGGCC CTTACACGGG TAGCCGTGCC TACTCGCTGA CGATTGGGTC GCCCACCTTG ACCATCACGC CGGCCTCGGG CTCTCTCAGC GGTGTCGCAG GCACCGCTTA CAGCCGCAAC TTCACGGCAA GTGGTGGTAC GAACCCATAC ACCTATGGCT TCGTGGTGAA TAGCGGCACT GTCCCCACGG GCCTTACGTG GAACGGCACC ACCGGCAGGC TGGCAGGGAC CCCAACCACG GCCGGCACGG TCAGCTTTAC CGTCACCGCT ACCGACAGTT CGACGGGGAC GGGTGCTCCG TTTGCGGTAA GCGGTGTCTA CACGCTTACC ATTGCCGCGC CTAGCCTGAC GGTATCGCCG GCCACGCTCC CCAACCCGGG GATTGCAACG GCGTACAGCC AAACCATAAC GGCGGCCAAC GGCACCGCGC CGTACACCTA TGCTGTTACG GCGGGCGCAT TGCCGGCTGG CCTGAGCCTG AACACCTCCG GGTTCCTGTC GGGTACACCC ACCGCAGGCG GAACGTTCAA CTTCACCATC ACGACAACGG ATGCCAACAG CTTCACGGCC AGCCGTGCTT ACAGCGTCAC CATCGGTGCG CCCACGGTCA CGGTGAATCC GGCGGCCGCA ACGTCGGCCC AAGTCACCAC GGCCTACAGC CAGACCTTCA CAGCTACCGG CGGTACCGCG CCCTACACGT ACGCCGTCAC CACCGGCACG TTGCCTGCGG GCCTGAGCTT GAACGCCAGC ACTGGCGTTC TGTCGGGCAC GCCCACTACG CTGGGCAGCA GCTCATTCAC AGTGAGGGCC ACCGACAGCA GCACGGGCAC TGGCGCCCCG TACAGCGGTA CGCGCAGCTT CACGATCACG GTGGGCCAGG TGATCGGCAC CGCGCCGGCA ATCACGGCCA CCACCATGTC GACGGCACCG ATCACGCTGC ATGCAACGGC CAATGCAACC GGCGGTCCGT TCTCGTCCGT CACGATTGTC AATCCGCCTG CCAGCGGCAC TGCCGTCGTC AACGGTCTGG ACATCGTCTA CACGCCGACC CAGACCACCT CCGGCGCAGT CAATTTCACT TATGCGCTGA TCAACACGGC CGGCACGTCC GCGCCGATTC CGGTAACGGT CAACGTGAAC GCCGTGCCGA TTGCGGTGGC GCAGAGGCAG GCCATCACGT CGTCGGGCCA GGGGGTGAGC GTGGACTTGA CCGAAGGCGC CACGGGTGGC CCCTTCACGG CGGCGACGCT GGTGTCGGTG GTGCCCTACA ACGCGGGTAC GGCCAGCATC GTGCAGAAGG CGATCCAGAC ACCGGCCGGC CTGAAGCCGC AGGCAGTGGC GGCATCGACG TACGTGCTGA ACTTCACCCC GTCAGGCACC TACAGCGGCC AGGCCGTGCT GACGTACACG CTGTCCAACG CGTTCGCCAC CTCGACGGCT GCAACGGTGC AGGTGAGCGT GGCGCCGCGC AAGGACCCCT CGGCCGATCC TGATGTGGCA GGTCTGATCA ACGCGCAAGT GCAGGCCGCG CGCCGCTTCG CCACCACGCA GATTGACAAC TACAACCGCC GCCTGGAAGC GCTGCACGGC ACTGGCCGGC CACCCTCGAG CAACGGTTTG ACGGTCGCCA TGCCGGGCCA GCGCGCAGAC ATGCAAGCGC GTTGCCAGGA TGTGGCCGGC ATTTCCGCGC ACGATGCCTG CATGCGCGGT GACGGTCAGG GCGTGCGGCC ATTCGCACGC GGCAAGCGCA ACGCCGATGC GGCCAGCGGC AGCACCGACA AGTCGACCGC CGATGCCGGC CCCGATCTGC CCGGCGCTGA TGCCGCCAGC GCGGGCCCGG ACAACACCGA CCCGAATCTC GCGTTCTGGA GCGCCGGTAC GCTGGACTTT GGTTTTGCCA GCGCTGGCAC GCAACGCTCC GGTTTCCGCT TCACCACAGG CGGTGTGACG GCCGGCGCGG ACTACCGCGT GTCCGATCAG CTCTCGATCG GGGGTGGGTT TGGTTACGGG CGTGACTCCA CCGACATCGG CAACGCGGGC ACCAGGAGCA CGGGCGACAG CTATAGCCTC GCGCTGTACG GCAGCTATCG CCCGCTGCCT TCGTTGTTCG TCGATGGTGT GGCCGGCTTC GGCACGCTCA GTTTCGACTC GCGCCGCTGG GTGACGGACT CCAACGACTT CGCCACCGGC AAGCGCAGCG GCAAGCAGGT TTTCGCCTCC GTGTCGGCCG GCTATGAGCA TCGCGATCGT GCGTGGCTGA TCTCGCCTTA CGGGCGCCTG TCGGTCTCGC AATCGACGCT GGATCAGTTC ACCGAATCGG GCGCCGGCAT CAACGCGCTG ACGTATTTCG ACCAGACGGT GACGACGGTA TCCGGCACGC TCGGCCTGCG TGCGGAATAC ACGCAGAAGA CCAAGTGGGG CACGTTCCTG CCGTTCGCAC GGGTGGAGTA CCAGCACGAC TTCAATGGGC AGAGCAATGC AGGTTTGGCG TATGCCGATC TGGCATCGGC AGGCCCTGCT TATTACGTGC CGGGTACACC GTTTGGGCGC GATCGAATGC AGATCGGGTT GGGGACAAAG TTCCGGACTG GCCCGCTCAC GTTTGGGTTG GACTACAGCG TGATGGCGGG CATGGGGGGC TTGCAGCAGG GGGTTCGGTT GACGTTTGCT GCACCGTTCT GA
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Protein sequence | MRVLTQNSPF GRRGVAGWSM FRRLEAQGRE WLRQGLLAVL AIWLTVLSQG ALAAACTVSF STNMNAQKSY VFTAADTSNC DPFLSGIAYD SSGGTNSSSG PLFLTATAQG GKVAIYSGSV PPSGDPYTNG FVYTPPSNFS GTDTATFYTS NDSVTWVPNG IVSIAVIPTA PTVTGIAPNT GTTGGGTSVN ISGTNFTVAT AVKFGATNAT NFTVNSATQI TATSPAGSTG VVDVTVTNGG GTSTTSAADR FTYVLPPTAG PTSITVAHGS TNNHATVDVT GATSVAVGTQ PTHGTATVSG GSITYTPNPS YSGMDSFTYT ASNAGGTTAP ATITVTVSNA TVNYAPSSPA GGTVGAAYSQ SLASASGGTA PYTYTIASGA LPPGLTLTSN GMLSGTPTAD GSFNFAVTAT DSSTGTGPFS ATSSTLSLVI GTPTITVSPV SLTNATVAAA YSQTITASGG TGPYTYAITS GALPAGLTLS SGGVLSGTPT AGGTFNFTVT TTDSSTGTGP YTGSRTYTLV VNAPTLALTP ASGSLSASTG VAYSQTFTGS GGLAPYTYSL AVHSGTMPTG LSFNTGTGVL SGTPTTTGVV NFSVTATDHA TGAGPYSTSG TYTLTTSAPT ITVSPTTLSA ATVGAAYGQT AAAGGGAAPY SYALTAGALP TGLSLNGSTG AITGTPTAGG TFNFAVTATD ANSYTGSRAY TLTVNAATVS VSPSTLPGGT IATAYSQTML ASGGTGPYTY AVTAGSLPTG LTLSSNGTLS GTPTAGGVFN FTVTATDSST GTGPYTGSRA YSLTIGSPTL TITPASGSLS GVAGTAYSRN FTASGGTNPY TYGFVVNSGT VPTGLTWNGT TGRLAGTPTT AGTVSFTVTA TDSSTGTGAP FAVSGVYTLT IAAPSLTVSP ATLPNPGIAT AYSQTITAAN GTAPYTYAVT AGALPAGLSL NTSGFLSGTP TAGGTFNFTI TTTDANSFTA SRAYSVTIGA PTVTVNPAAA TSAQVTTAYS QTFTATGGTA PYTYAVTTGT LPAGLSLNAS TGVLSGTPTT LGSSSFTVRA TDSSTGTGAP YSGTRSFTIT VGQVIGTAPA ITATTMSTAP ITLHATANAT GGPFSSVTIV NPPASGTAVV NGLDIVYTPT QTTSGAVNFT YALINTAGTS APIPVTVNVN AVPIAVAQRQ AITSSGQGVS VDLTEGATGG PFTAATLVSV VPYNAGTASI VQKAIQTPAG LKPQAVAAST YVLNFTPSGT YSGQAVLTYT LSNAFATSTA ATVQVSVAPR KDPSADPDVA GLINAQVQAA RRFATTQIDN YNRRLEALHG TGRPPSSNGL TVAMPGQRAD MQARCQDVAG ISAHDACMRG DGQGVRPFAR GKRNADAASG STDKSTADAG PDLPGADAAS AGPDNTDPNL AFWSAGTLDF GFASAGTQRS GFRFTTGGVT AGADYRVSDQ LSIGGGFGYG RDSTDIGNAG TRSTGDSYSL ALYGSYRPLP SLFVDGVAGF GTLSFDSRRW VTDSNDFATG KRSGKQVFAS VSAGYEHRDR AWLISPYGRL SVSQSTLDQF TESGAGINAL TYFDQTVTTV SGTLGLRAEY TQKTKWGTFL PFARVEYQHD FNGQSNAGLA YADLASAGPA YYVPGTPFGR DRMQIGLGTK FRTGPLTFGL DYSVMAGMGG LQQGVRLTFA APF
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