Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3540 |
Symbol | |
ID | 6286424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 3708389 |
End bp | 3710023 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642627124 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001901091 |
Protein GI | 187930604 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.200796 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACCT ACGACTACAT CATCATCGGC GCAGGCTCCG CAGGCTGCGT CCTCGCCAAC CGCCTGACCC GCGACCCCGA CGTTTCCGTG CTGCTGCTGG AAGCCGGCGG CAAGGACGAT TACCACTGGA TCCACATCCC CGTCGGCTAT CTGTACTGCA TCGGCAACCC GCGCACCGAC TGGCTCTATC GCACCCGCGA AGAACCCGGC TTGAACGGCC GCTCGCTCGG CTACCCGCGC GGCCGCGTGC TGGGTGGGTG CTCGTCGATC AACGGCATGA TCTACATGCG TGGTCAGCGT GAAGACTACG ACGGCTGGGC CGCCATCACC GGTGATGATT CCTGGAGGTG GGACGCCGTG CTGCCGCTGT TCAAGGCCAG CGAGAACTAT CACGGCGGCG CGAACGCATG GCACGGCGCA AACGGCGAAT GGCGCGTCGA GCCGCAACGC CTGCACTGGC AGGTGCTGGA GACCTTCATC GAGGCGGCCG TGCAGGCGGG CATCCCGCGC ACGAGTGACT TCAACCGCGG CGACAACTTT GGCGTTGGCT ACTTCGAGGT CAACCAGAAG CGCGGCATCC GCTGGAACAC GGCCAAGGGC TTTCTGCGCC CGGCCTCGCA GCGTCCGAAC CTGACCATCG TGACGGGTGC GCAAGTCCGG GCGCTGACGT TTGACGGCAA GCGCTGCACT GGCGTGACGT ATCGCGGGGC CGGGCAGGAC TACACGGTGG CCGCGCGCGA AGAGGTGATC CTGTCGGCGG GCGCGATCAA CTCGCCGCAA TTGCTGGAGC TGGCCGGCAT TGGTCAGCCG GAACGTCTGC AGGCGCTCGG CATTCCGGTG CGCCAGGCGC TGCCGGGTGT CGGAGAAAAC CTGCAGGACC ACCTGCAACT GCGCAGCGTG GTCAAGGTGA ACGGCGTGCC CACGCTCAAC ACGCGCGCCT CAAACTGGTG GGGCAAGGCG CTCATCGGCA TGCAATACGC GTTCAACCAG AGCGGGCCGA TGAGCATGGC GCCGTCGCAG CTGGGCGTGT TCGCGCGCTC GAACCCGCAC GTGTCGCGGC CCGATGTGGA GTACCACGTG CAGCCGCTCT CGCTCGACAA GTTTGGCGAT CCGCTGCACG CGTTCAATGC GTTTACCGCG AGCGTGTGCA ATCTGCGGCC GACCTCGCGC GGCACGGTGC ATGTCACGTC CGCCGACCCG TTTGCCGCGC CGACCATCGC GCCGAACTAC TTGTCCACAG AGGAAGACCG CAAGGTCGCG GCCGATTCGC TGCGCCTCAC ACGCCGCATC GTCGCGCAGC CAGCCTTGGC GCAATACAGG CCCGAGGAGT ACCTGCCCGG CGCGGCGTTT CAAACCGACG AGGAACTTGC CCGCGCCGCC GGCGAGATCG GCACGACCAT CTTCCACCCG GTCGGCACGT GCCGCATGGG GCGCGCCGAT GATGCAAACG CGGTGGTCGA CGCGCAGCTG CGCGTGCGCG GGATCGAAGG CCTGCGGGTG GTCGACGCGT CCGTCATGCC GACGATTACG TCGGGCAATA CCAACTCGCC GACGATCATG ATTGCGGAGA AGGCGAGCGA GATGATCCGT GCCGCGCGCA AGGCCCGAGC CCGCGGTGAG GCCGTCCCGG CCTGA
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Protein sequence | MDTYDYIIIG AGSAGCVLAN RLTRDPDVSV LLLEAGGKDD YHWIHIPVGY LYCIGNPRTD WLYRTREEPG LNGRSLGYPR GRVLGGCSSI NGMIYMRGQR EDYDGWAAIT GDDSWRWDAV LPLFKASENY HGGANAWHGA NGEWRVEPQR LHWQVLETFI EAAVQAGIPR TSDFNRGDNF GVGYFEVNQK RGIRWNTAKG FLRPASQRPN LTIVTGAQVR ALTFDGKRCT GVTYRGAGQD YTVAAREEVI LSAGAINSPQ LLELAGIGQP ERLQALGIPV RQALPGVGEN LQDHLQLRSV VKVNGVPTLN TRASNWWGKA LIGMQYAFNQ SGPMSMAPSQ LGVFARSNPH VSRPDVEYHV QPLSLDKFGD PLHAFNAFTA SVCNLRPTSR GTVHVTSADP FAAPTIAPNY LSTEEDRKVA ADSLRLTRRI VAQPALAQYR PEEYLPGAAF QTDEELARAA GEIGTTIFHP VGTCRMGRAD DANAVVDAQL RVRGIEGLRV VDASVMPTIT SGNTNSPTIM IAEKASEMIR AARKARARGE AVPA
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