Gene Rpic_3496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3496 
SymbolputA 
ID6288651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3661312 
End bp3665283 
Gene Length3972 bp 
Protein Length1323 aa 
Translation table11 
GC content68% 
IMG OID642627081 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001901048 
Protein GI187930561 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.271253 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTACAA CCACCCTCGG GGTCAAGCTG GACGATGCTT CGCGTGAACG CCTCAAGCGC 
GTTGCGCAGT CCATTGACCG CACGCCGCAC TGGCTGATCA AGCAGGCGAT CTTCACGTAT
CTGGACCAAG TGGAGCGGGG GCAGCTGCCA AATGACGCAA ACGGCACGGC GGCGGATGGC
CTCCCGTCCG CCGCCGCCGC CGTCTCCGAC GTGCATGACG GCGATGACGC CGCGGTGCAA
CCGTTCCTCG AATTTGCGCA AAGCGTGCAA CCGCAGTCGG TTCTGCGCGC GGCCATCACC
GCAGCCTACC GCCGCCCTGA AACCGAAGCC ATTCCGATGC TGCTCGAGCA GGCCCGCCTG
CCGGGCGCGC TCGCCTCGGA AGCCAAGCAG CTCGCGCGGG ATCTGGCCGG CAAGCTGCGT
ACGCAAAAGG TCGGCACCGG CCGTGAAGGG CTGGTGCAGG GCCTCATTCA AGAATTCTCC
CTGTCGAGCC AGGAAGGCGT GGCGCTGATG TGCCTGGCCG AAGCGCTGCT GCGCATTCCG
GACAAGGCCA CGCGCGACGC GCTCATCCGC GACAAGATCA GCAACGGCAA CTGGTATTCG
CATGTCGGCC AGAGCCCGTC GCTGTTCGTG AATGCCGCCA CCTGGGGTCT GCTGCTCACG
GGCAAGCTGG TGGCCACGCA CAACGAAGCA GGGCTGTCGA AGGCGCTCAC GCGCATCATC
GGCAAGAGCG GCGAACCGCT GATCCGCAAG GGTGTGGACA TGGCGATGCG CCTGATGGGC
GAGCAGTTCG TCACCGGCGA AACCATTTCC GAAGCGCTGG CCAACGCGCG CAAGTTCGAG
GCCGAAGGCT TCCGCTACTC CTACGACATG CTCGGCGAGG CCGCGATGAC GGAGGAAGAC
GCGCAGCGCT ACCTCGCGTC GTACGAGCAG GCCATCCGCG CGATCGGGCA GGCCTCGGGC
GGGCGCGGCA TCTACGAAGG GCCGGGCATC TCGATCAAGC TGTCGGCGCT GCACCCGCGC
TACAGCCGCG CGCAGTACGA CCGCACGATC AACGAGCTGT ATCCGCGCGT GAAGGCGCTG
GCGATGCTGG CGCGTGAATA CGACATCGGC ATCAACATCG ACGCCGAAGA GGCCGACCGC
CTGGAACTGT CGCTCGACCT GCTCGAGCGC CTGTGCTTTG CGCCCGAGCT GGCCGGCTGG
AACGGCATCG GCTTCGTGGT GCAGGGCTAC CAGAAGCGCT GCCCGTTCGT GCTCGACTAC
ATCATCGATC TGGCTCGTCG CAGCAAGCAC CGCCTGATGA TCCGCCTCGT AAAGGGCGCG
TACTGGGACA GCGAGGTCAA GCGCGCCCAG GTCGACGGCC TGGAGGGCTA CCCGGTCTAC
ACGCGCAAGG TCTACACCGA CGTGTCGTAC CTGGCCTGCG CGCGCAAGCT GCTGGCCGCG
CCGGAGGCGA TCTTCCCGCA GTTCGCCACG CACAACGCGC ACACGCTGGC GGCCATTTAC
CACATGGCCG GCCAGAACTA TTACCCCGGC CAATACGAAT TCCAGTGCCT GCACGGCATG
GGCGAGCCGC TGTACGAGCA GGTCGTCGGC AACAAGCCGG GCAAGCTGAA CCGCCCGTGC
CGCATCTACG CGCCGGTCGG TACGCACGAA ACGCTGCTGG CCTACCTGGT GCGCCGTCTG
CTGGAAAACG GCGCCAACAC CTCGTTCGTG AACCGCATTG CGGACGAGTC GATTCCGCTG
GACGACCTCG TCGCCGACCC GGTGGCGGTG GTGGAAAAGA TGCACGCCGA TGAAGGGACG
CTCGGCCTGC CGCATCCGAA GATTCCGCTG CCGCGCGCCC TTTACGGTGA CGTTCGCGCA
AACTCGTCGG GCATCGACCT GGCGAACGAG CAGCGCCTGG CGTCGTTGTC GTCCGCCCTT
CTTGCCGGCA CCAGCACGGT CTGGACCGCC GAGCCGACGA TCGGCGACGC ATCGTACGTG
GGTGGCGCGC CGCAGCCGGT GCGCAATCCG GCGGACCTGC GCGACATCGT CGGCCATGTG
ACGGAAGCCA CCGAAGCCGA TGTGGATGCC GCGCTGTCGG CCGCCACCGC CGCCGCCCCG
ATCTGGCAAG CCACGCCGCC GGAAGCGCGC GCTGCGCTGC TCGATCGCGC CGCCGACTTG
ATGGAAGGCG AGATGCAGCA CCTGATGGGC CTGATCATCC GCGAGGCCGG CAAGACGCTG
TCCAACGCCA TCGCCGAGGT GCGCGAAGCC GTCGACTTCC TGCGCTATTA CGCGGCGCAG
GTGCGCGGTG GGTTCTCCAA CGACACGCAC CGTCCGCTGG GCCCGGTGGT CTGCATCAGC
CCGTGGAACT TCCCGCTGGC GATCTTCACC GGCCAGGTCA GCGCCGCGCT GGCTGCGGGC
AACCCGGTGC TGGCCAAGCC CGCTGAACAG ACCCCGCTGA TTGCGGCGCA AGCCGTGCGC
ATCCTGCGCG AAGCCGGCGT GCCGGCCGGT GCCGTGCAAC TGCTGCCGGG CCGCGGTGAG
ACTGTCGGCG CGGCGCTGGT GAAGGACGGG CGCACCAAGG GCGTGATGTT CACCGGCTCG
ACTGAAGTCG CGCGCATCCT GCAGCGCACG CTTGCCGGCC GCCTGGATGC CAACGGCGCG
CCGATTCCGC TGATTGCCGA GACCGGCGGT CAGAACGCGA TGATTGTCGA TTCGTCGGCG
CTGGCTGAGC AGGTGGTGGC CGATGTGCTG TCGTCTGCGT TTGATTCGGC AGGCCAGCGT
TGTTCGGCGC TGCGCGTGCT GTGCCTGCAG GATGACGTCG CCGACCGCGT GCTCGCGATG
CTCAAGGGTG GCATGGCCGA GCTGGCGATG GGCAATCCGG ATCGTCTCGC CACCGATGTC
GGCCCGGTGA TCGACGCCGA AGCGCGCGAC AACATCGTCG GCCACATCGA AGCGATGCGC
GCCAAGGGCC GCCGTGTGCA TCAGGCACCG GTGCCGGCCG CATGCGCGCA CGGCACGTTC
GTGCCGCCGA CGGTGATCGA ACTCGACAGC CTGTCGGACC TGACGCGCGA GATCTTCGGC
CCCGTGCTGC ACGTGGTGCG CTGGAAGCGT ACGGCGGACA ACGCTGGCCT GACCAAGCTG
GTCGAACAGA TCAACGGCAC GGGCTACGGC CTGACGCTGG GCATCCACAC GCGCATCGAC
GAGACCATCG CACACGTGGT CGACCGCGCG CACGTCGGCA ACCTGTATGT GAACCGCAAT
ATCGTCGGCG CCGTGGTGGG CGTGCAGCCG TTCGGCGGCG AAGGGCTGTC GGGTACGGGC
CCGAAGGCCG GCGGCCCGCT GTATCTGCTG CGTCTGCTGT CGACCTGCCC GCAGGACGCC
ATGCGCACCG CAATGCAACT CACCGCTGGT GCCGGTACGG AGGTCGATAC CGACGCGCGC
CGCGCGCTGC TGGCGCCGTT CGATGCGCTG ACGGAATGGG CACGCCAGCA ATCGCCGGAA
CTGGCGGCGC TGTGCGAGCG CCTGGCTGCA GCCTCGGCCA CGGGCGCCAC CGCCACGCTG
CCCGGCCCGA CCGGCGAGCG CAACACCTAC ACGCTGTTGC CGCGCGAAGC CGTGCTGTGC
GTGGCGGCCG ATCCGGCGGA TTGGCTGCGC CAACTGGCGG CCGTGCTGGC TGTCGGCAGC
GTGGCCGTTG TGCAGGAAAA CCCTGCCATC GAAGCAGTAC TTCGGGGCTT GCCGGCGGCA
GTACAATCGC GCGTCCGCGT GGTCGGCTCG ACCGACGAAG CGGCGTTTGA TGCGGTGCTG
CATCACGGCG ATTCGGACCA TCTGCGCGCC ATCTGCGAAG GACTGGCACG ACGTGCCGGC
CCGATCGTGG GGGTGCAAGG CCTGCCGCAC GGCGGGGAAG GGCTGGCGCT GGAGCGCCTG
CTGATCGAGC GTTCGCTGTC GGTCAATACG GCCGCCGCGG GTGGCAACGC CAGCCTGATG
ACCATCGGCT GA
 
Protein sequence
MATTTLGVKL DDASRERLKR VAQSIDRTPH WLIKQAIFTY LDQVERGQLP NDANGTAADG 
LPSAAAAVSD VHDGDDAAVQ PFLEFAQSVQ PQSVLRAAIT AAYRRPETEA IPMLLEQARL
PGALASEAKQ LARDLAGKLR TQKVGTGREG LVQGLIQEFS LSSQEGVALM CLAEALLRIP
DKATRDALIR DKISNGNWYS HVGQSPSLFV NAATWGLLLT GKLVATHNEA GLSKALTRII
GKSGEPLIRK GVDMAMRLMG EQFVTGETIS EALANARKFE AEGFRYSYDM LGEAAMTEED
AQRYLASYEQ AIRAIGQASG GRGIYEGPGI SIKLSALHPR YSRAQYDRTI NELYPRVKAL
AMLAREYDIG INIDAEEADR LELSLDLLER LCFAPELAGW NGIGFVVQGY QKRCPFVLDY
IIDLARRSKH RLMIRLVKGA YWDSEVKRAQ VDGLEGYPVY TRKVYTDVSY LACARKLLAA
PEAIFPQFAT HNAHTLAAIY HMAGQNYYPG QYEFQCLHGM GEPLYEQVVG NKPGKLNRPC
RIYAPVGTHE TLLAYLVRRL LENGANTSFV NRIADESIPL DDLVADPVAV VEKMHADEGT
LGLPHPKIPL PRALYGDVRA NSSGIDLANE QRLASLSSAL LAGTSTVWTA EPTIGDASYV
GGAPQPVRNP ADLRDIVGHV TEATEADVDA ALSAATAAAP IWQATPPEAR AALLDRAADL
MEGEMQHLMG LIIREAGKTL SNAIAEVREA VDFLRYYAAQ VRGGFSNDTH RPLGPVVCIS
PWNFPLAIFT GQVSAALAAG NPVLAKPAEQ TPLIAAQAVR ILREAGVPAG AVQLLPGRGE
TVGAALVKDG RTKGVMFTGS TEVARILQRT LAGRLDANGA PIPLIAETGG QNAMIVDSSA
LAEQVVADVL SSAFDSAGQR CSALRVLCLQ DDVADRVLAM LKGGMAELAM GNPDRLATDV
GPVIDAEARD NIVGHIEAMR AKGRRVHQAP VPAACAHGTF VPPTVIELDS LSDLTREIFG
PVLHVVRWKR TADNAGLTKL VEQINGTGYG LTLGIHTRID ETIAHVVDRA HVGNLYVNRN
IVGAVVGVQP FGGEGLSGTG PKAGGPLYLL RLLSTCPQDA MRTAMQLTAG AGTEVDTDAR
RALLAPFDAL TEWARQQSPE LAALCERLAA ASATGATATL PGPTGERNTY TLLPREAVLC
VAADPADWLR QLAAVLAVGS VAVVQENPAI EAVLRGLPAA VQSRVRVVGS TDEAAFDAVL
HHGDSDHLRA ICEGLARRAG PIVGVQGLPH GGEGLALERL LIERSLSVNT AAAGGNASLM
TIG