| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3314 |
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| Symbol | rpoB |
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| ID | 6287906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 3460778 |
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| End bp | 3464884 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642626890 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001900868 |
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| Protein GI | 187930381 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTACA GCTTTACCGA GAAGAAGCGT ATTCGCAAGA GTTTCGCGAA ACGCGCAACG
GTTCATCAGG TTCCCTTCCT GCTTGCCACC CAGATTCAAT CGTATGCCCA GTTCTTGCAG
GAGAACGCTC CTGTTGCACA ACGCAAGAGC GAAGGTCTGC AAGCGGCGTT CAACGCCATT
TTCCCCATCG TGTCGCACAA TGGTCTGGCA CGCATGGAGT TCGTGTCGTA CCACCTGTCC
AACCCGCCGT TTGACGTCAA GGAATGTCAG CAGCGTGGTC TGACCTTCCA CTCGGCGCTG
CGCGCAAAAG TGCGCTTGAT CATCAACGAC CGCGAGAATC CCACCAAGGT CAAGGAGATC
AAGGAGCAGG AAGTCTACAT GGGCGAAATT CCGCTCATGA CCTCCACCGG TTCGTTCGTG
ATCAACGGGA CGGAACGTGT GATCGTGTCC CAGCTGCACC GTTCGCCGGG CGTGTTCTTC
GAGCACGACA AGGGCAAGAC GCACAGCTCG GGCAAGCTGC TGTTCTCGGC GCGGATCATC
CCGTACCGCG GCTCGTGGCT CGATTTCGAA TTCGACCCGA AGGATATCCT TTACTTCCGC
GTTGACCGCC GCCGCAAGAT GCCGGTGACG ATCCTGCTGA AGTCCATTGG CCTGACGCCG
GAACAGATCC TGGCGCACTT CTTCGTGTTC GATAACTTCA CGCTCAAGAC CGAAGGCGCA
CTGATGGAAT TCGTGCCCGA GCGTCTGCGC GGTGAAGTCG CTCGCTTCGA CATTTCCGAC
AAGAACGGCA AGGTCGTGGT CGAGAAGGAC AAGCGCATCA ACGCCAAGCA CATCCGCGAC
CTGGATTCCG CGGGCACCAA GCTGATCAGC GTGCCGGAAG ACTACCTGCT GGGCCGCGTG
CTGGCGAAGA ACATCGTCGA CCCGGACACC GGTGAAGTCC TGGCCAACGC CAACGACGAA
CTGACCGAAG GCGTGCTCGA GAAGCTGCGT GACGCCGGCG TGAAGGAAAT CCAGACGCTG
TACACGAACG ACCTGGATCA AGGTCCGTAC ATGTCGGCGA CGCTGCGCAC GGACGACACC
GCCGACCAGA CCGCCGCGCG TATCGCCATC TACCGCATGA TGCGCCCCGG CGAGCCGCCG
ACCGAAGACG CCGTTGAAGC ACTGTTCCAG CGTCTGTTCT ACAGCGAAGA CTCGTACGAC
CTGTCGCGCG TTGGCCGCAT GAAGGTCAAC AGCCGCCTGA ACCGCTCGAG CGGTACAGGC
CCGATGGTGC TGACCGACGA GGACATCCTC GACACGATCA AGCTGCTGGT GAACCTGCGT
AACGGCAAGG GCGAAGTCGA CGATATCGAC CACCTCGGCA ATCGCCGTGT GCGCTGCGTC
GGCGAACTGG CAGAAAACCA GTTCCGTGCC GGGCTGTCGC GTGTTGAACG CGCCGTGAAG
GAACGTCTGG GCCAGGCCGA GACGGAAAAC CTGATGCCGC ACGACCTGAT CAACTCGAAG
CCGATTTCGT CGGCGATTCG CGAGTTCTTC GGTTCGTCGC AGCTGTCGCA GTTCATGGAC
CAGACCAACC CGCTGTCGGA AGTCACGCAC AAGCGTCGTA TTTCCGCCCT GGGCCCGGGC
GGTCTGACGC GCGAGCGTGC GGGCTTTGAA GTCCGTGACG TGCACCCGAC CCACTACGGC
CGCGTGTGCC CGATCGAAAC GCCGGAAGGT CCGAACATTG GTCTGATCAA CTCGCTGGCG
CTGTATGCAC AACTGAACGA CTACGGCTTC CTCGAAACGC CGTACCGCAA GGTTGAAAAC
GGCAAGCTGA CCGATCAGGT GGATTACCTG TCGGCCATCG AGGAAGGTAA GTACGTGGTG
GCGCAGGCCA ACGCGACGCT GGACAAGGAC GGCAACCTGA TTGACGAACT GGTCTCCGCG
CGTGAAGGCA GCGAGCGTGA AACCCGTATG GTCACGCCGG ACCGCGTGCA GTACATCGAC
GTGGCACCGT CGCAGATCGT GTCGGCTGCA GCTTCGCTGG TGCCGTTCCT CGAGCACGAT
GATGCAAACC GTGCACTGAT GGGCGCAAAC ATGCAGCGTC AGGCCGTGCC CTGCCTGCGT
GCGGACAAGC CGCTGGTGGG TACCGGCGTC GAGCGCACCG TGGCAGTGGA CTCGGGTACC
GCCGTGCAGG CAACCCGTGG CGGCGTGGTC GACTACGTTG ACGCGAACCG TGTGGTGATC
CGCGTAAACG ATGCCGAAGC CGTCGCCGGT GAAGTCGGCG TGGACATCTA CAACCTGATC
AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATGGT CAAGGTGGGC
GACGTTGTTG CCCGCGGCGA CGTGATTGCT GACGGCGCCT CGACCGACAT GGGCGAGCTG
GCGCTCGGCC AGAACATGCT GGTCGCGTTC ATGCCCTGGA ACGGCTACAA CTTCGAGGAT
TCGATCCTGA TCTCGGAGCG CGTCGTGGCT GAAGACCGCT ACACCTCGAT CCACATCGAG
GAGCTGTCGG TCGTTGCTCG CGACACCAAG CTCGGACCGG AAGAAATCAC GCGCGACATC
TCGAACCTGG CCGAAGCCCA ACTGGCTCGC CTGGACGAAT CGGGCATCAC GTACATCGGC
GCAGAAGTGG AAGCCGGCGA CGTGATGGTC GGCAAGGTCA CGCCCAAGGG CGAGACCCAG
CTGACGCCGG AAGAGAAGCT GCTGCGTGCG ATCTTCGGTG AGAAGGCGTC CGACGTGAAG
GACACCTCGC TGCGCGTGCC TTCGGGCATG AGCGGTACCG TGATCGACGT GCAGGTCTTC
ACGCGTGAAG GCGTGGTGCG TGACAAGCGC GCCCAGTCGA TCATCGATGA GGAACTGAAG
CGCTACCGCC TGGACCTGAA CGACCAGCTG CGTATCGTGG AAGGCGATGC CTTCCAGCGT
CTGGAGCGTC TGCTGGTGGG CAAGATTGCC AACGGCGGCC CGAAGAAGCT GGCCAAGGGC
ACCGCGCTCA CGAAGGAATA CCTGGCCGAT CTGGACAAGT GGCACTGGTT CGACATCCGC
CCGGCAGAAG ACGAAGTCGC GCTGCAGCTG GAAGCCGTGA AGGTTGCCAT CGAGCAGAAG
CGCCACGACT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA
CTGCCGCCGG GCGTGATCAA GATGGTCAAG GTGTACCTGG CCGTGAAGCG TCGCCTGCAG
CCTGGCGACA AGATGGCCGG CCGTCACGGT AACAAGGGTG TTGTGTCGAA GATCACCCCG
ATCGAAGACA TGCCGTACAT GGCCGACGGC ACACCTGCCG ACATCGTGCT GAACCCGCTG
GGCGTGCCTT CGCGGATGAA CGTGGGTCAG ATTCTCGAAA CCCACCTGGG TTGGGCCGCA
CGCGGTCTGG GCGAGCGCAT CGGCAACATG CTCAAGGCGC AAGCCAAGGC TGCCGAGATC
CGCAAGCTGC TGGGTCAGAT CTACAACGAG AGCGGCAAGG TTGAAGATCT GGACAGCCTG
TCCGACGCGG AAATCCTCGA GCTGGCCGAG AACCTGAAGA AGGGCGTGCC GTTCGCGACG
CCGGTGTTCG ATGGTGCGCA TGAGGACGAA ATCCGCCGCA TGCTGGACCT CGCCTATCCG
GAAGACATTG CGAAGGAGAA GGGCCTGACC GCTTCCAAGC AACAGGTCAC GCTGTTCGAC
GGCCGCACCG GTGAAGCCTT CGAGCGTCCG GTCACGCTGG GCGTGATGCA CATGCTCAAG
CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGTTCGA CCGGTCCGTA CTCGCTGGTG
ACGCAGCAGC CGCTGGGCGG TAAGGCCCAG TTCGGTGGCC AGCGTTTCGG TGAAATGGAA
GTGTGGGCAC TCGAAGCGTA CGGCGCATCC TACGTGCTGC AGGAAATGCT GACCGTGAAG
TCGGATGACG TGAACGGCCG GACCAAGGTG TACGAGAACA TCGTCAAGGG CGAGCACTCG
ATCGATGCCG GCATGCCGGA ATCGTTCAAC GTGCTGGTGA AGGAAATCCG CTCGCTGGGT
ATCGACATCG ACCTCGAGCG CAACTAA
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| Protein sequence | MAYSFTEKKR IRKSFAKRAT VHQVPFLLAT QIQSYAQFLQ ENAPVAQRKS EGLQAAFNAI
FPIVSHNGLA RMEFVSYHLS NPPFDVKECQ QRGLTFHSAL RAKVRLIIND RENPTKVKEI
KEQEVYMGEI PLMTSTGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII
PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKSIGLTP EQILAHFFVF DNFTLKTEGA
LMEFVPERLR GEVARFDISD KNGKVVVEKD KRINAKHIRD LDSAGTKLIS VPEDYLLGRV
LAKNIVDPDT GEVLANANDE LTEGVLEKLR DAGVKEIQTL YTNDLDQGPY MSATLRTDDT
ADQTAARIAI YRMMRPGEPP TEDAVEALFQ RLFYSEDSYD LSRVGRMKVN SRLNRSSGTG
PMVLTDEDIL DTIKLLVNLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK
ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEVTH KRRISALGPG
GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LYAQLNDYGF LETPYRKVEN
GKLTDQVDYL SAIEEGKYVV AQANATLDKD GNLIDELVSA REGSERETRM VTPDRVQYID
VAPSQIVSAA ASLVPFLEHD DANRALMGAN MQRQAVPCLR ADKPLVGTGV ERTVAVDSGT
AVQATRGGVV DYVDANRVVI RVNDAEAVAG EVGVDIYNLI KYTRSNQNTN INQRPMVKVG
DVVARGDVIA DGASTDMGEL ALGQNMLVAF MPWNGYNFED SILISERVVA EDRYTSIHIE
ELSVVARDTK LGPEEITRDI SNLAEAQLAR LDESGITYIG AEVEAGDVMV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGVVRDKR AQSIIDEELK
RYRLDLNDQL RIVEGDAFQR LERLLVGKIA NGGPKKLAKG TALTKEYLAD LDKWHWFDIR
PAEDEVALQL EAVKVAIEQK RHDFDLAFEE KRKKLTQGDE LPPGVIKMVK VYLAVKRRLQ
PGDKMAGRHG NKGVVSKITP IEDMPYMADG TPADIVLNPL GVPSRMNVGQ ILETHLGWAA
RGLGERIGNM LKAQAKAAEI RKLLGQIYNE SGKVEDLDSL SDAEILELAE NLKKGVPFAT
PVFDGAHEDE IRRMLDLAYP EDIAKEKGLT ASKQQVTLFD GRTGEAFERP VTLGVMHMLK
LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK
SDDVNGRTKV YENIVKGEHS IDAGMPESFN VLVKEIRSLG IDIDLERN
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