Gene Rpic_3299 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3299 
Symbol 
ID6289659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3435626 
End bp3436834 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content61% 
IMG OID642626875 
Productelongation factor Tu 
Protein accessionYP_001900853 
Protein GI187930366 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00521718 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000291329 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAAAGG AAAAGTTTGT ACGGACCAAA CCGCACGTGA ACGTTGGTAC GATCGGTCAC 
GTTGACCACG GTAAGACCAC GCTGACCGCA GCGATCGCAA CCGTGCTGTC CGCCAAGTTT
GGTGGCGAAG CGAAGAAGTA CGACGAAATC GACGCAGCGC CGGAAGAAAA GGCACGCGGC
ATCACGATCA ACACCGCGCA CGTCGAGTAC GAGACGGCCA ACCGTCACTA TGCGCACGTT
GACTGCCCGG GCCACGCCGA CTACGTCAAG AACATGATCA CCGGTGCCGC CCAGATGGAC
GGTGCCATCC TGGTGTGCTC GGCCGCTGAC GGCCCGATGC CGCAAACGCG TGAGCACATC
CTGCTGGCCC GTCAGGTCGG CGTGCCGTAC ATCATCGTCT TCCTGAACAA GTGCGACATG
GTGGACGACG CTGAATTGCT GGAACTGGTC GAGATGGAAG TGCGTGAACT TCTGTCGAAG
TATGAGTTCC CGGGCGACGA CACCCCGATC ATCAAGGGTT CGGCCAAGCT GGCGCTGGAA
GGCGACAAGG GCGAACTGGG CGAAGTGGCC ATCATGAACC TGGCCGACGC ACTGGACACC
TACATCCCGA CGCCGGAACG CGCAGTTGAT GGTGCATTCC TGATGCCGGT GGAAGACGTG
TTCTCGATCT CGGGTCGCGG CACCGTGGTG ACCGGCCGTA TCGAGCGCGG CATCATCAAG
GTCGGCGAAG AAATCGAAAT CGTCGGTATC GCCGTGGACG GCGACAAGCC GAAGATCGAC
AAGACCACCT GCACGGGCGT GGAAATGTTC CGCAAGCTGC TGGACCAAGG TCAGGCAGGC
GACAACGTCG GCATTCTGCT GCGCGGCACG AAGCGCGAAG ATGTTCAGCG CGGTCAAGTG
CTGGCCAAGC CGGGCTCGAT CAAGCCGCAC ACGGAATTCA CGGGCGAGGT CTACATCCTG
TCGAAGGACG AAGGCGGCCG TCACACGCCG TTCTTCAACA ACTACCGTCC GCAGTTCTAC
TTCCGTACGA CGGACGTGAC CGGCTCGATC GCCTTGCCGG AAGGCAAGGA AATGGTCATG
CCGGGCGACA ACGTGTCGAT CACCGTCAAG CTGATCGCCC CGATCGCCAT GGAAGAAGGT
CTGCGCTTCG CCATCCGTGA AGGCGGCCGT ACCGTGGGCG CTGGCGTCGT TGCCAAGATC
CTGAAGTAA
 
Protein sequence
MAKEKFVRTK PHVNVGTIGH VDHGKTTLTA AIATVLSAKF GGEAKKYDEI DAAPEEKARG 
ITINTAHVEY ETANRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI
LLARQVGVPY IIVFLNKCDM VDDAELLELV EMEVRELLSK YEFPGDDTPI IKGSAKLALE
GDKGELGEVA IMNLADALDT YIPTPERAVD GAFLMPVEDV FSISGRGTVV TGRIERGIIK
VGEEIEIVGI AVDGDKPKID KTTCTGVEMF RKLLDQGQAG DNVGILLRGT KREDVQRGQV
LAKPGSIKPH TEFTGEVYIL SKDEGGRHTP FFNNYRPQFY FRTTDVTGSI ALPEGKEMVM
PGDNVSITVK LIAPIAMEEG LRFAIREGGR TVGAGVVAKI LK