Gene Rpic_3157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3157 
Symbol 
ID6288895 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3308422 
End bp3308910 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content60% 
IMG OID642626732 
ProductYbaK/prolyl-tRNA synthetase associated region 
Protein accessionYP_001900711 
Protein GI187930224 
COG category[S] Function unknown 
COG ID[COG2606] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000990307 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGATCT CCAGCACCCT CGACGGCTGC CTGCGCAGCA AGGGCTGCCT GTACGAGGTG 
ATTCGCCATC CGCATACCCA TACCAGCACG GAGACCGCGC AGTCTGCACA TGTCCCGGGC
GACCGTCTGG CCAAGACGCT GCTGCTCGAA GACAAGCTCG GCTATGTCGC GGCCGTGTTG
CCATCGACGT ATCACCTGCA TCTGTCGGAA TTGCAAAAGG AAACTGGCCG CCTGGACCTG
ACACTGGCCG ATGAATCCGA GTTGCGCGAA GTCTTTCGGG ACTGCGATGC TGGCGCCGTA
CCACCCGTTG GCATGGCTTA CGGCATGCCC ACCTACATCG ACAGCAGTCT GATGGCCCAC
GGCGACGTCT ACTTCGAAGC CGGCGACCAC GAAAATGTCG TGCATATGGA CATGGATCAG
TTCATGGCTT TAATGCGCGA CGCCAAGCCC GGACACTTCG CGTATCGCAT GCAGGGCATG
CTCTTCTGA
 
Protein sequence
MSISSTLDGC LRSKGCLYEV IRHPHTHTST ETAQSAHVPG DRLAKTLLLE DKLGYVAAVL 
PSTYHLHLSE LQKETGRLDL TLADESELRE VFRDCDAGAV PPVGMAYGMP TYIDSSLMAH
GDVYFEAGDH ENVVHMDMDQ FMALMRDAKP GHFAYRMQGM LF