| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2959 |
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| Symbol | secD |
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| ID | 6287487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 3081667 |
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| End bp | 3083556 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642626529 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001900514 |
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| Protein GI | 187930027 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCT ATCCGCTCTG GAAATACCTT GTGATCCTGG TGGCGCTTGC CATTGGGTTC
CTCTATACGC TGCCGAACTT CTTCGGTGAG GCGCCTGCTG TGCAGGTGTC TTCGGGCAAG
GCCACCGTCA AGGTCGACCT GAACGTGCAA AAGCAGGTCG AGAGCCTGCT GGCTGCGGCC
AGCATTCAGC CCGACGGCGT GTTCTTCGAC AACAACGGCA CCTCCGCCAG CGTGCGCGTG
CGTTTTGCCG ACACCGACAC GCAGCTCAAG GCCAAGGACA TCCTGGCCCG CGGCCTGAAC
ACCGATCAAG CCGATCCGAC CTACATCGTG GCGCTGAACC TGCTGCCCGG TTCGCCGCGC
TGGTTGAGCG GGGCACCGTT CTTTGCCAAG CCCATGTTCC TGGGCCTCGA TTTGCGCGGT
GGCGTGCACT TCCTGCTGCA GGTCGACATG AACGGCGCCG TGACGAAGAA GCTCGACTCG
CTGGCCGGCG ACATCCGCAC GCAACTGCGT GACAAGGGCA TTCGACACAG CGGCATCGAC
CGCAACGGCA ACACCATCAC GATCAAGTTC AGCACCCCGG ACGACGCCGA CCGCGCCCGC
ACGCTGCTGG CCGATTCGAC CCGCGAACTG GCCTACACCG TGGACAAGAG CGCCGACGGC
GCCACGCTCA CCGGCACCTT CACCGCCGCT GCGATGAAGG AAGTGCAGGA CAACGCAGTC
AAGCAGAACA TCGTCACGCT GCATAACCGA GTGAACGAAC TCGGCGTGGC CGAGCCGGTG
ATCCAACAGC AGGGCCCGGA CCGCATCGTT GTGCAATTGC CCGGCGTGCA GGACACCGCC
AAGGCCAAGG ACATCATCGG CCGCACCGCT ACGCTGGAAG CGCGCCTGGC CGATCCGAAC
GCGCCGCTCG CGCCCCGCCC CGGCGACCCG GTACCGCTGG GCGACGAGCT GTTCACGCAA
GGGCGCAGCG CTCCCGTCCT GCTGCAGAAG CAGGTGATCT TCACGGGCGA TCGCATCACC
AGCGCCTCGG CGGGCTTCGA CCAAAACCAC AATTCGTCGG TCGACATCAC GCTCGACGGC
CAGGGCGGCC GCATGCTGCG CGATGTCTCG CGTGACAACA TCGGCAAGCG CATGGGTATC
GTGCTCTTTG AAAAGGGCAA GGGCGAAGTG CTGACGGTGG CGACCATCCA GTCCGAACTG
GGCTCGCGCT TCCAGATCAC CGGCATGGGC TCGACCGAGG CGGCTTCCGA CCTGGCGCTG
CTGCTGCGTG CAGGCTCGCT GGCCGCGCCA ATGGAAATCA TCGAAGAACG CACCATCGGC
CCATCGCTGG GTGCCGATAA CATCAAGAAA GGCTTCGATT CGGCGCTGTA CGGCTTCCTC
GCCATCTCGG TGTTCATGGT GCTGTACTAC ATGCTGTTCG GCGCGTTCTC GGTGGCGGCC
CTCGGCGTCA ACGTGTTCCT GCTGATCGCA CTGCTCTCCA TGCTGCAGGC CACGCTCACG
TTGCCGGGTA TCGCGGCCAT CGCACTGGCG CTCGGTATGG CCATTGACGC GAACGTGCTG
ATCAACGAGC GCGTGCGTGA AGAGCTGCGC AGCGGCGCGT CGGCACAGAT GGCCATCGCC
GCCGGCTTTG ACCGTGCCTG GGCGACCATC CTCGATTCGA ACGTGACGAC GCTCATCGCC
GGTCTGGCGC TGATCGCCTT CGGTTCGGGC CCGGTACGCG GCTTCGCGAT CGTGCACTGC
CTGGGGATCG GCACGTCCAT GTTCTCGGCG GTGTTCTTCA ACCGCGGTCT CGTGAACCTC
TGGTACGGCC GCAAGAAGAA GCTCCAGAGC GTCGCCATCG GGCAGGTGTG GAAGCCGGGC
AATACGAACG CGGAATCGCC CGCCAAGTAA
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| Protein sequence | MNRYPLWKYL VILVALAIGF LYTLPNFFGE APAVQVSSGK ATVKVDLNVQ KQVESLLAAA
SIQPDGVFFD NNGTSASVRV RFADTDTQLK AKDILARGLN TDQADPTYIV ALNLLPGSPR
WLSGAPFFAK PMFLGLDLRG GVHFLLQVDM NGAVTKKLDS LAGDIRTQLR DKGIRHSGID
RNGNTITIKF STPDDADRAR TLLADSTREL AYTVDKSADG ATLTGTFTAA AMKEVQDNAV
KQNIVTLHNR VNELGVAEPV IQQQGPDRIV VQLPGVQDTA KAKDIIGRTA TLEARLADPN
APLAPRPGDP VPLGDELFTQ GRSAPVLLQK QVIFTGDRIT SASAGFDQNH NSSVDITLDG
QGGRMLRDVS RDNIGKRMGI VLFEKGKGEV LTVATIQSEL GSRFQITGMG STEAASDLAL
LLRAGSLAAP MEIIEERTIG PSLGADNIKK GFDSALYGFL AISVFMVLYY MLFGAFSVAA
LGVNVFLLIA LLSMLQATLT LPGIAAIALA LGMAIDANVL INERVREELR SGASAQMAIA
AGFDRAWATI LDSNVTTLIA GLALIAFGSG PVRGFAIVHC LGIGTSMFSA VFFNRGLVNL
WYGRKKKLQS VAIGQVWKPG NTNAESPAK
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