| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2578 |
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| Symbol | |
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| ID | 6286359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 2687339 |
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| End bp | 2689618 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642626150 |
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| Product | Lysine decarboxylase |
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| Protein accession | YP_001900137 |
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| Protein GI | 187929650 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.181221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCC GCTTTCCCGT CATCATCATT GACGAGGACT TCCGCTCCGA GAACATCTCC
GGGTCGGGCA TTCGCGCGCT GGCCCAGGCC ATCGAGCAGG AAGGGATGGA GGTGACCGGC
CTCACCAGCT ATGGTGACTT GACCTCGTTC GCGCAACAGT CCAGCCGCGC GTCCACCTTC
ATCGTCTCGA TCGACGACGA CGAGTTCATC AATCCGGACA ACGACAAGCC GGAACCGGAA
GCCGTCGAAA ACCTGCGCGC CTTCGTGGCA GAAGTGCGTC GCCGCAACGC CGACATCCCC
ATCTTCCTGT ACGGCGAAAC GCGCACCTCG CGCCATCTGC CGAACGACGT GCTGCGCGAG
CTGCACGGCT TCATCCACAT GTTCGAGGAC ACGCCCGAGT TCGTGGCCCG ACACATCATT
CGTGAAGCGC GCAATTACCT GGATTCGCTG CCGCCGCCGT TCTTCAAGGC GCTGATCGAC
TACGCGCAGG ACAGCTCGTA TTCGTGGCAT TGCCCGGGGC ACTCGGGCGG CGTGGCGTTC
CTGAAGAGCC CGGTGGGGCA GGTGTTCCAT CAGTTCTTTG GCGAGAACAT GCTGCGCGCC
GACGTCTGCA ACGCCGTGGA AGAACTGGGC CAACTGCTGG ATCACACGGG TCCCGTGGCC
GCGTCTGAGC GCAACGCTGC GCGCATCTTC GGTTCGGACC ACATGTTCTT CGTGACCAAC
GGCACGTCGA CGTCGAACAA GATGGTGTGG CACGCCAACG TGGCGCCCGG TGACATCGTG
GTGGTGGACC GCAACTGCCA CAAGTCGAAT CTGCACGCGA TCATGATGAC GGGCGCGATC
CCCGTGTTCC TGATGCCGAC GCGCAACCAC TTCGGCATCA TCGGCCCGAT CCCGAAGAGC
GAGTTCGAGC CGGAAACGAT CGCCAGGAAG ATCGCCGACC ATCCGTTTGC CAGCAAGGCC
AAGAACAAGA AGCCGCGCAT CCTGACCATC ACGCAGGGTA CGTACGACGG CGTGCTGTAC
AACGCCGAGA TGATCAAGAA CATGCTGTCG ACCGAAATCG ACACACTGCA CTTTGACGAA
GCGTGGCTGC CGCACGCGTC GTTCCACCCG TTCTACGAGA ACATGCACGC GATCGGCCAC
GGCCGTCCGC GCAGCAAGGA TGCGCTGGTC TATGCCACGC AGAGCACGCA CAAGCTGCTG
GCTGGCTTGT CACAGGCCTC GCAGATCCTC GTGCAGGATT CCGAGACGCG CAAGCTCGAT
ACGTATCGCT TCAACGAGGC GTATCTGATG CACACGTCGA CGAGCCCGCA GTACTCGATC
ATTGCGTCGT GCGACGTCGC GGCCGCGATG ATGGAAGCGC CGGGCGGCAC CGCGCTGGTG
GAAGAGAGCA TTGCCGAAGC GCTGGACTTC CGCCGCGCCA TGCGCAAGGT TGAGCACGAA
TACCTGGGCA CAAATGGTGG CAACGGCCGC GGCGACGACT GGTGGTTCAA GGTCTGGGGC
CCGAACGATC TGTCGGACGA AGGCATCGAA GAGCGCGAAG CGTGGATGCT CAAGGCCAAC
GAGCGCTGGC ACGGCTTCGG CAACCTGGCC GAAGACTTCA ACCTGCTCGA TCCGATCAAG
GCCACCATCA TCACCCCGGG CCTGGATGTG GACGGCAAGT TCAGCGATTC CGGCATCCCG
GCCGCCATCG TCACGCGCTA CCTGGCCGAG CACGGCATCA TCGTCGAGAA GACGGGTCTG
TACTCGTTCT TCATCATGTT CACGATCGGC ATCACCAAGG GCCGCTGGAA CTCGCTGGTG
ACGGAGTTGC AGCAGTTCAA GGACGATTAC GACAACAACC AGCCGCTGTG GCGCGTGTTG
CCGGAATTCG TGCGCCAGTA TCCGCAGTAC GAGCGCATCG GCCTGCGCGA ACTGTGCGAC
AGCATCCACA GCGTCTATCA GGCCAACGAC GTGGCCCGCG TGACGACCGA GATGTACCTG
TCGGACATGG AGCCGGCGAT GATCCCGTCG GACGCTTGGG CCAAGATGGC GCACCGCGAG
ACCGAGCGTG TAGCGATCGA CGATCTGGAA GGCCGCATCA CCGGCATCCT GCTGACACCG
TATCCGCCGG GCATTCCGCT GCTGATCCCG GGCGAGCGCT TCAATAAAAC GATCGTGCAG
TACCTGCAGT TCGCTCGCGA GTTCAACAAG CTGTTCCCGG GCTTCGAGAC GGATATTCAC
GGGCTGGTCG AGGAAGAGGT CGACGGCAGG ATGGAGTACT TCGTCGATTG CGTGCGCTGA
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| Protein sequence | MKFRFPVIII DEDFRSENIS GSGIRALAQA IEQEGMEVTG LTSYGDLTSF AQQSSRASTF
IVSIDDDEFI NPDNDKPEPE AVENLRAFVA EVRRRNADIP IFLYGETRTS RHLPNDVLRE
LHGFIHMFED TPEFVARHII REARNYLDSL PPPFFKALID YAQDSSYSWH CPGHSGGVAF
LKSPVGQVFH QFFGENMLRA DVCNAVEELG QLLDHTGPVA ASERNAARIF GSDHMFFVTN
GTSTSNKMVW HANVAPGDIV VVDRNCHKSN LHAIMMTGAI PVFLMPTRNH FGIIGPIPKS
EFEPETIARK IADHPFASKA KNKKPRILTI TQGTYDGVLY NAEMIKNMLS TEIDTLHFDE
AWLPHASFHP FYENMHAIGH GRPRSKDALV YATQSTHKLL AGLSQASQIL VQDSETRKLD
TYRFNEAYLM HTSTSPQYSI IASCDVAAAM MEAPGGTALV EESIAEALDF RRAMRKVEHE
YLGTNGGNGR GDDWWFKVWG PNDLSDEGIE EREAWMLKAN ERWHGFGNLA EDFNLLDPIK
ATIITPGLDV DGKFSDSGIP AAIVTRYLAE HGIIVEKTGL YSFFIMFTIG ITKGRWNSLV
TELQQFKDDY DNNQPLWRVL PEFVRQYPQY ERIGLRELCD SIHSVYQAND VARVTTEMYL
SDMEPAMIPS DAWAKMAHRE TERVAIDDLE GRITGILLTP YPPGIPLLIP GERFNKTIVQ
YLQFAREFNK LFPGFETDIH GLVEEEVDGR MEYFVDCVR
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