Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_2254 |
Symbol | |
ID | 6289745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 2368153 |
End bp | 2370741 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642625826 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001899820 |
Protein GI | 187929333 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGCAG CAGAACGCAT GTCCAACAAA ATCGGCAACC ACCGCACAGT CAAAGCGAGC AGCAACGCGA TCCCTGACCT ACTGGGGCAG CCACAGTTGG AATTCGTGCG CGTCTCGGGC CGCGAAGCGC TGAGCGAGTT GTTCACCTAC ACAGTGGATC TGCGCCCCGT TTCGTTGGCA GCCGATCAGT CCATGCTCGA ATCAGATCTA GACGCTGCCA TTGGCCACGA GATGACCTTG TCCATCGAAC TGGACGGCAT GGGCACCGGC CTGCTTGGTG GTGTTGGTGC GGGTGTGCGA GAAATCACCG GCCTGATCAC CGCCGTCGAA CTGATCGGCG GCGTGGACAA CAATCGTCTC TACCGCTACA CCTTGCGCCC CTGGTTTTGG TTGGCCAGTC AGACCTCTGA TTACAAAGCG TTCCAAAACA AGTCTGTCAT CGACATCCTC GACGAAGTGC TGGCCGATTA CCCGTATTCG GTGGACAAGC GTCTGGACAC CAGTGTCTTC CCCAAGCTCA TCTGGGAAGT CCAGCACGGC GAGACCGACG CTCACTTCAT CCAACGTCTC ACCGAAGAAT GGGGTATCAG CTATTTCTTC GAACACGATG GCAGCCACCA CCGGCTCGTG CTCGTCTCCG AATCCGGCGC CTGGCGCAAA TTCCCCAGCG GGGCATATCA CGCGCTGTCG ATCTACCCGC AAGGTTTCAA GATCGACCAG GAGCACCTGA CACGTTTCGA GCCCATCAAC CGTCTGCGTA CCGGCAAGGT TACGTTCAAG GATTACGACC CACGCCAGCC CAAAGCCGAC CTCACCACCA GTGACAGCCT GCCGCGCGAC ACGCTGTTTT CCGAGTTCGA ACGCTACGAA TACGAACCCG GCCTCTATGA CAGCCGAGAT GTCGGCAACT TGCACGCTCG CATTCATACG GAAGAGCGGC GCGCCAAGGG GCGACGCATG CGTGGTGTCG GCAACCTGCG CGGCGTCGCC GCCGGCAACA CCTACCACAT CACCAATCAC GACCATGACG CGCTGAACCG CGAAGTCCTG ATTGTGAGCA CGGACCTGAT GTTGGAAGAC GTGGGCATCC ACAGTGGCGG CACCCAGCAA TACACCTGCC GCGTCAGCTT CGAAGCTCAC CCCACGGACG AAGTCTTCCG TCCAGAACGG ATCGCCCACA AGCGTCGCGT TCAAGGTATC CAGCGCGCCG TCGTCACCGG TCCCGAGAAC CAAGAGATTT GGACCAACGA CCACGGCTGC GTCAAAATCC AGTTCGAATG GGACCGCTAC GGCCAGCACG ACGAGAATTC CTCGCCCTGG ATCCGCGTGT CCAATGGCTG GTCCGGCGAT CAATTCGGCA CCATGCAAAT TCCTCGTATT GGTCAGGAGG TCCTGGTCGA CTATCTGAAC GGCGATCCGA ACACGCCGAT CATCGTTGGT CGCGTACCCA ACCAGCTCAA CACACCGCCG TGGGCGCTGC CGACGCAGCA TGCGTTGTCC GGCATTGCCA GCAAGGAACT CTTCGGGCGG CGGCGTAACC ATCTTCTGAT GGATGACACC CAAGGGCAGA TTCAGGCCCA ACTGTCGTCA GACCACCAGA CATCCCAGCT CAACCTGGGC TACTTGACCG GTGTGCCGGG GCAGCCTGGG CGCAAAGACC CGCGTGGCGA AGGTTTTGAT CTGCGTACTG ATGGGCAGGG CAGTGTGCGA GGCGCCAAGG GCCTGTTCTT TACCGCAGAA GGGCAAATCG CTGCCGTGGG TGGCCACTTC ACGCGAGAGG AATTCATCCG CTGCATGCGC GCAGCGCTTG AGACCGCCGA ATCGTTCGGC AACTACAGCA GTCAGCACGA AGCGCTCAAG AGCGACACCG ATCCGCAATC CAAGCTAACC CAAGCCATCG AGGACTGGGA CGCTGGCGCC AACAACCATA AGGACGCCCC GGGGCAAGGT GGACAACCCA TCATTGGCGC CTACGCGCCG GCGGGCATGG CGTTCGCCAC ACCCGAGACG CTGACCAGCT ACGCCGGCAA GCACGTCGAC ACGATCTCCA AACTCAACCA GCAACACACG GCAGGTCAGC AATACATTGT CAACGCTGGC ACTGGCATCA GCCAGTTCGC CCACAGTGGT GATTGGAAGG CCACCGCCCA CCAAGGCCAG CTCGTGCTAC AGGCGCAGAG CAAGAACATG GCGCTCAACG CCAAGACGGA TGTGGTGATT ACCACCACCG ACGGCACCAT CGTGCTCAAT GGCAAGACCG GTATCACCTT CATGAGTGGC AATGCCGGCA TCCGCATCGC GGATGGGTGC GTGGATATCT TTGGACCGAC GCGCGTGCAT GCGCATACCG CCGACTTTGA TGCGCCAGGG CCGCAGGGGA TTGATGGGGC ATTACCGCAG TTCGACTCAG GGGATACGGG GCGCAAGTTC CGGCTGATTC GTCCCGCAGA CAATGAACCC GTAGCGAACC GGTCGTATGA AATCGTCAAG AGAGACGGCA GCGTTATCAG GGGAGTCAGT AACGCCCTGG GAGAAACCGA CCTGCATGAA TCTCAGGCAG CAGACGTGCT GGCAATCAAG TTTGGCTAA
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Protein sequence | MGAAERMSNK IGNHRTVKAS SNAIPDLLGQ PQLEFVRVSG REALSELFTY TVDLRPVSLA ADQSMLESDL DAAIGHEMTL SIELDGMGTG LLGGVGAGVR EITGLITAVE LIGGVDNNRL YRYTLRPWFW LASQTSDYKA FQNKSVIDIL DEVLADYPYS VDKRLDTSVF PKLIWEVQHG ETDAHFIQRL TEEWGISYFF EHDGSHHRLV LVSESGAWRK FPSGAYHALS IYPQGFKIDQ EHLTRFEPIN RLRTGKVTFK DYDPRQPKAD LTTSDSLPRD TLFSEFERYE YEPGLYDSRD VGNLHARIHT EERRAKGRRM RGVGNLRGVA AGNTYHITNH DHDALNREVL IVSTDLMLED VGIHSGGTQQ YTCRVSFEAH PTDEVFRPER IAHKRRVQGI QRAVVTGPEN QEIWTNDHGC VKIQFEWDRY GQHDENSSPW IRVSNGWSGD QFGTMQIPRI GQEVLVDYLN GDPNTPIIVG RVPNQLNTPP WALPTQHALS GIASKELFGR RRNHLLMDDT QGQIQAQLSS DHQTSQLNLG YLTGVPGQPG RKDPRGEGFD LRTDGQGSVR GAKGLFFTAE GQIAAVGGHF TREEFIRCMR AALETAESFG NYSSQHEALK SDTDPQSKLT QAIEDWDAGA NNHKDAPGQG GQPIIGAYAP AGMAFATPET LTSYAGKHVD TISKLNQQHT AGQQYIVNAG TGISQFAHSG DWKATAHQGQ LVLQAQSKNM ALNAKTDVVI TTTDGTIVLN GKTGITFMSG NAGIRIADGC VDIFGPTRVH AHTADFDAPG PQGIDGALPQ FDSGDTGRKF RLIRPADNEP VANRSYEIVK RDGSVIRGVS NALGETDLHE SQAADVLAIK FG
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