| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2228 |
|---|
| Symbol | |
|---|
| ID | 6286217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2338530 |
|---|
| End bp | 2340287 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642625800 |
|---|
| Product | acetolactate synthase 3 catalytic subunit |
|---|
| Protein accession | YP_001899794 |
|---|
| Protein GI | 187929307 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.635342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGC CAAGCGCGGA ATTTTCCCAC GCCAATAGCG GTTCACCTGC CGACATGATG
GGGGCTGACA TCCTCGTCAA TGCGCTCGCG GCAGAGGGCG TCGAGTTCGT CTGGGGTTAC
CCCGGCGGCG CGGTGCTCTA TATCTACGAC GCGTTCTACA AGCAAAACAA GATCGAACAC
ATCCTGGTGC GCCATGAACA GGCGGCAGTC CATGCGGCTG ACGGCTATGC GCGTGCCACG
GGCAAGGTCG GTGTCGCCCT TGTGACGTCC GGCCCGGGCG TGACCAATGC CGTGACAGGC
ATCGCCACTG CTTACCTGGA TTCGATCCCG ATGGTGATCA TCACCGGCAA CGTGCCGACG
CACGCCATCG GCCAGGACGC CTTCCAGGAG TGCGATACCG TCGGCATTAC CCGCCCGATC
GTCAAGCACA ACTTCCTGGT CAAGGACGTG CGCAACCTCG CCTCGACCAT CAAGAAGGCG
TTCTACATCG CCGCAACGGG CCGTCCGGGT CCGGTGGTGG TGGATATCCC CAAGGACGTC
TCGCGCGAAC TCTGCAAGTA CGAGTACCCG AAGACCATCG AGATGCGCTC GTACAGCCCG
GTCAACAAGG GGCATTCGGG GCAGATTCGG AAGGCAGTGA GCCTGCTGCT GCAGGCCGAG
CGTCCGTACA TCTATTCGGG TGGCGGCGTG GTGCTTGCCG AGGCCAGCGA AGAGCTGCGC
CAGCTGGCTG CGCTGACGGG CTACCCCGTG ACGAACACGC TGATGGGCCT GGGTGCGTTC
CCCGGCACCA GCAAGCAGTT CGTGGGCATG CTCGGCATGC ACGGCACGTA CGAAGCCAAC
ATGGCGATGC AGAACTGCGA CGTTCTGATT GCCATCGGCG CGCGATTCGA TGATCGCGTG
ATCGGCAGCC CGGCGCACTT CACCTCGCAG CCGCGCAAGA TCATCCACAT CGACATCGAT
CCGTCCTCCA TTTCGAAGCG GGTGAAGGTC GACATCCCCA TCGTCGGCAA CGTCAAGGAC
GTGCTGCAGG AGATGATTGC CCAGATCCAG TCTGGCGAAG CCAAGCCGAA CAAGACGGCG
CTGGCCAAGT GGTGGGAGCA GATCGAGCAG TGGCGCAGTG TCGATTGCCT GAAATACGAC
CGCACCTCCG AGATCATCAA GCCGCAGTAT GTGGTCGAGA AGATCTGGGA ACTGACCAAT
GGCGATGCAT TCATCTGCTC CGACGTCGGT CAGCATCAGA TGTGGGCTGC GCAGTTCTAC
AAGTTCAACG AGCCGCGTCG CTGGATCAAC TCTGGCGGCC TGGGCACGAT GGGCGTGGGG
CTGCCGTACG CGATGGGCAT CAAGAAAGCG TTCCCGGACA AGGAGGTCGT CACCATCACC
GGTGAAGGCT CGATCCAGAT GTGTATCCAG GAACTGTCGA CGTGCCTGCA GTACGACACG
CCGGTGAAGA TCTGCTCGCT CAACAACGGT TATCTGGGCA TGGTGCGCCA GTGGCAGGAA
ATCGAATACG ACAACCGCTA CTCGCATTCC TACATGCAGG CGCTGCCGGA CTTCGTGAAG
TTGGCTGAAT CGTATGGCCA CGTCGGCATG CGCATCGAGA AGACGTCTGA CGTCGAGCCC
GCGCTGCGCG AAGCCTTCCG ACTCAAGGAT CGCACCGTGT TCCTCGACTT CCAGACCGAC
CCGACAGAAA ACGTCTGGCC GATGGTTCAG GCAGGCAAGG GTATTTCTGA AATGCTGCTC
GGCGCGGAGG ACCTCTAA
|
|---|
| Protein sequence | MNMPSAEFSH ANSGSPADMM GADILVNALA AEGVEFVWGY PGGAVLYIYD AFYKQNKIEH
ILVRHEQAAV HAADGYARAT GKVGVALVTS GPGVTNAVTG IATAYLDSIP MVIITGNVPT
HAIGQDAFQE CDTVGITRPI VKHNFLVKDV RNLASTIKKA FYIAATGRPG PVVVDIPKDV
SRELCKYEYP KTIEMRSYSP VNKGHSGQIR KAVSLLLQAE RPYIYSGGGV VLAEASEELR
QLAALTGYPV TNTLMGLGAF PGTSKQFVGM LGMHGTYEAN MAMQNCDVLI AIGARFDDRV
IGSPAHFTSQ PRKIIHIDID PSSISKRVKV DIPIVGNVKD VLQEMIAQIQ SGEAKPNKTA
LAKWWEQIEQ WRSVDCLKYD RTSEIIKPQY VVEKIWELTN GDAFICSDVG QHQMWAAQFY
KFNEPRRWIN SGGLGTMGVG LPYAMGIKKA FPDKEVVTIT GEGSIQMCIQ ELSTCLQYDT
PVKICSLNNG YLGMVRQWQE IEYDNRYSHS YMQALPDFVK LAESYGHVGM RIEKTSDVEP
ALREAFRLKD RTVFLDFQTD PTENVWPMVQ AGKGISEMLL GAEDL
|
|---|
| |