| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2153 |
|---|
| Symbol | |
|---|
| ID | 6286694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 2265000 |
|---|
| End bp | 2265986 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642625724 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_001899719 |
|---|
| Protein GI | 187929232 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01759] malate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.266134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG CACCCATGCG CGTCGCAGTG ACCGGCGCTG CTGGACAGAT CGGTTACGCC
CTACTGTTCC GCATCGCCGC CGGCGAAATG CTGGGCAAGG ATCAGCCCGT CATCCTGCAA
CTGCTGGAAA TCCCCGATGA GAAGGCCCAG AAGGCGCTCA AGGGTGTGAT GATGGAGATC
GAAGACTGCG CCTTCCCGCT GCTGGCTGGC ATGCAAGCGC ATTCCGACCC GATGACCGCG
TTCAAGGACG TCGACGTGGC CCTGCTGGTG GGCGCCCGCC CCCGCGGCCC GGGCATGGAG
CGCGCGGACC TGCTGTCGGC CAACGCCCAG ATCTTCACGG CGCAAGGCAG GGCACTCAAC
GCCGTTGCCT CGCGCAACGT GAAGGTGCTG GTGGTCGGCA ACCCGGCCAA CACCAACGCC
TACATCGCCA TGAAGTCGGC GCCGGACCTG CCGCGCGAGA ACTTCACCGC CATGCTGCGC
CTGGACCACA ACCGCGCCCT GTCGCAGATC GCCGCCAAGA CCGGCAAGCC CGTGTCGAGC
ATCGAAAAGC TGTTCGTGTG GGGCAACCAC AGCCCGACGA TGTACGCCGA CTACCGCTAC
GCCACCATCG ACGGCAAGAG CGTCAAGGAC ATGATCAACG ACCCGGTGTG GAACAACGAC
GTGTTCCTGC CGACCGTTGG CAAGCGCGGC GCCGCCATCA TCGAAGCGCG CGGGCTGTCG
TCGGCGGCTT CGGCTGCCAA TGCCGCCATC GACCACGTGC GTGACTGGGT GCTCGGTACC
AACGGCAAGA TCGTCACGAT GGGCATCCCG TCGAACGGCG AATACGGCAT TCCGAAGGAC
GTGATGTTCG GCTTCCCGGT CACCACCGAG AACGGCAAGT ACAAGATCGT CGAAGGCCTG
GAAATCGACG AGTACAGCCA AGGCAAGATC AAGATCACGC TCGACGAGCT GGAAGGCGAG
CGTGCAGGCG TGCAGCATCT GCTGTAA
|
|---|
| Protein sequence | MAKAPMRVAV TGAAGQIGYA LLFRIAAGEM LGKDQPVILQ LLEIPDEKAQ KALKGVMMEI
EDCAFPLLAG MQAHSDPMTA FKDVDVALLV GARPRGPGME RADLLSANAQ IFTAQGRALN
AVASRNVKVL VVGNPANTNA YIAMKSAPDL PRENFTAMLR LDHNRALSQI AAKTGKPVSS
IEKLFVWGNH SPTMYADYRY ATIDGKSVKD MINDPVWNND VFLPTVGKRG AAIIEARGLS
SAASAANAAI DHVRDWVLGT NGKIVTMGIP SNGEYGIPKD VMFGFPVTTE NGKYKIVEGL
EIDEYSQGKI KITLDELEGE RAGVQHLL
|
|---|
| |