Gene Rpic_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1953 
Symbol 
ID6286305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2064589 
End bp2065053 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content64% 
IMG OID642625519 
Producttranscriptional regulator, MarR family 
Protein accessionYP_001899520 
Protein GI187929033 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID[TIGR02337] homoprotocatechuate degradation operon regulator, HpaR 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0121252 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTCCG CCTTCAAGCA CCGCAATCTT CCGCATCTCC TGCTGCGCGC GCGTGAGACC 
TTCATGGCGC GCTTTCGGCC GATCCTGCGC GAGCATGGCA TCACCGAACA GCAATGGCGC
GTGTTGCGTA CGCTCAACGA TACCGGCGAC ATGGAGCCCA ACCAACTCGC CGATGCATGC
CTGATCCTGA GCCCAAGCCT GACGCGCATG CTGGCGGCGA TGGAACAATC CGAGATGATC
GTGCGGACGA AGTCGTCGGT GGACCAGCGC CGGCAGGTGA TTTCACTCAC GCCTAAGAGC
CGCCAGTTCC TGGCCGACGT GGAACCGCAG GTGGATGCCG AGTACGCGCG CATTGAGGCG
CAGCTGGGCC GCGCGCGGCT GGACGCGCTC TACGCCGCCA TCGATGAGTC GATCCACGTC
ATGGAAACGC GCACGCCGAT GGGGCGCTTC ACTGGCGACG CGTAA
 
Protein sequence
MASAFKHRNL PHLLLRARET FMARFRPILR EHGITEQQWR VLRTLNDTGD MEPNQLADAC 
LILSPSLTRM LAAMEQSEMI VRTKSSVDQR RQVISLTPKS RQFLADVEPQ VDAEYARIEA
QLGRARLDAL YAAIDESIHV METRTPMGRF TGDA