| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1946 |
|---|
| Symbol | |
|---|
| ID | 6288431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2052360 |
|---|
| End bp | 2054033 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642625512 |
|---|
| Product | dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_001899513 |
|---|
| Protein GI | 187929026 |
|---|
| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.017866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000672984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG TCGTAGAAAT CAAGGTGCCG GACATCGGCG ACTACAAAGA CGTCCCGGTG
ATCGAAGTGC TGGTCAAGGC GGGCGATACC GTCAACGCCG AAGATTCGCT GGTTACGCTG
GAATCGGACA AGGCGACCAT GGACGTGCCC TCGCCCAAGA GCGGCGTCGT CAAGGAAGTG
AAGATCAAGG TGGGTGACAC CGTGTCGGAA GGCTCGCTGG TGCTGTTGCT CGAAGAGCAG
GGCGCTGCTG CCGCACCGGC CCCGGCACCT CAAGCTGCGC CCGCACCGGC TCCGGCCGCT
GCTGCACCGG CGCCCGCACC CGCCGCGCAA GCTCCGGCCC CTGCGCCGGC TGCCGCTGGC
GGCGGCACGG TTGAAGTGAA GGTGCCGGAC ATCGGCGACT ACACCGACGT GCCCGTCATC
GAAATCAGCG TGAAGGTGGG CGACAGGGTG GAAGCCGAGC AGTCGCTGAT CACGCTGGAA
TCGGACAAGG CCACGATGGA CGTGCCGTCG CCGGCTGCCG GCACGGTCAA GGAAATCCGC
GTGAAGGTGG GCGATGCCGT GTCGCAAGGC ACGCTGATCG TCGTCCTGGA AGGTGCTGGC
GGCGCTGCTG CTGCGCCAGC ACCCGCACAA GCGCCGGTGT CCGCACCGGC TGCCGCTGCG
CCGAGCCCGG CCCCTGCGGC TGCGCCCGCA GTTGCGTCGA CCGCAGCGCC CGCTACCTAC
ACCGCTGACA CGGTCGGTAC GGTTGGCAAG GCTGCTCACG CCAGCCCCTC GGTGCGCAAG
TACGCGCGCG AGCTGGGCGT CAACGTGAAT CTGGTCGGGG GCACGGGTCC GAAGAACCGC
ATCACGCAGG AAGACGTGCA GCGCTACGTC AAGGGCGTGA TGAGCGGCCA GGCTGCGGCG
CCGGGCAAGG CTGCCGCGGG TGCACCGGCC GGTGGCGGTG AGTTGAATCT GCTGCCGTGG
CCGAAGGTGG ACTTCACCAA GTTCGGTCCG GTCGATCCGA AGCCGCTGTC GCGTATCAAG
AAGATTTCCG GCGCGAACCT GCACCGCAAC TGGGTCATGA TTCCGCACGT CACCAACAAC
GACGAGGCGG ACATCACCGA ACTGGAAGCC TTCCGCGTGC AGATGAACAA GGACCACGAA
AAGGCCGGCG TGAAGTTCAC GATGCTGGCA TTCGTGATCA AGGCAGTCGT GGGCGCGCTG
AAGAAATTCC CGACCTTCAA CGCGAGCCTG GACGGCGACA ACCTGGTCTT CAAGCAGTAC
TTCCACGTCG GCTTCGCGGC CGATACGCCC AACGGGCTCG TGGTGCCGGT GATCCGCGAT
GCGGACAAGA AGGGTCTGAT CGACATCGCC AAGGAGATGG CGGACCTGTC GAAGGCTGCC
CGCGAAGGCA AGCTCAAGCC GGACCAGATG CAGGGGGGCT GCTTCTCGAT CTCGTCACTG
GGCGGCATCG GCGGCACGCA TTTCACGCCG ATCATCAACG CACCGGAAGT GGCCATCCTT
GGCTTGTCGC GTGGTTATCA GAAGCCCGTT TGGGACGGCA AGCAGTTCGT GCCGCGCCTG
ACGCTGCCGC TGTCGCTGTC GTACGATCAC CGCGTGATCG ACGGCGCCGA GGCTGCACGC
TTCAACGCGT ATCTGGCCAG CGTGCTGGCG GACTTCCGCC GCGTCAGCCT GTAA
|
|---|
| Protein sequence | MSQVVEIKVP DIGDYKDVPV IEVLVKAGDT VNAEDSLVTL ESDKATMDVP SPKSGVVKEV
KIKVGDTVSE GSLVLLLEEQ GAAAAPAPAP QAAPAPAPAA AAPAPAPAAQ APAPAPAAAG
GGTVEVKVPD IGDYTDVPVI EISVKVGDRV EAEQSLITLE SDKATMDVPS PAAGTVKEIR
VKVGDAVSQG TLIVVLEGAG GAAAAPAPAQ APVSAPAAAA PSPAPAAAPA VASTAAPATY
TADTVGTVGK AAHASPSVRK YARELGVNVN LVGGTGPKNR ITQEDVQRYV KGVMSGQAAA
PGKAAAGAPA GGGELNLLPW PKVDFTKFGP VDPKPLSRIK KISGANLHRN WVMIPHVTNN
DEADITELEA FRVQMNKDHE KAGVKFTMLA FVIKAVVGAL KKFPTFNASL DGDNLVFKQY
FHVGFAADTP NGLVVPVIRD ADKKGLIDIA KEMADLSKAA REGKLKPDQM QGGCFSISSL
GGIGGTHFTP IINAPEVAIL GLSRGYQKPV WDGKQFVPRL TLPLSLSYDH RVIDGAEAAR
FNAYLASVLA DFRRVSL
|
|---|
| |