Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1886 |
Symbol | |
ID | 6288378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 1986106 |
End bp | 1986885 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642625450 |
Product | ApbE family lipoprotein |
Protein accession | YP_001899454 |
Protein GI | 187928967 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00789462 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.699766 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCGA CTTGCCGGCG CGCGCGCCCG TTGCTCGGCA CCCTGGTCGA CGTGCAGGCT GAAGGGCCGG AGGCGGAAGC CGCCGTGGCG GCCGCGTTCG ACGAGATGGC CGCTGTGCAC GCATTGCTCA CTTTTCATGC GAAGGACAGT GAACTGCAGG CCATCAATCG CGCGGCGCCG GGTGAGAGGC TCATTGCAGA TACTCGGACC CTTGCCGTTC TGCGCCTTGC GGCTGAACTG CATATCGTGT CGGAGCGCGC ATTCGATTGC CGTGTCGGCC CCCTCGACTT GCTCGCAGAC AGGCGGTTTC CCATTTCCTT CGACGGTGAC ATCGTCGTCA AAGAAACCTG CGCATACATG GATCTTGGAG GCATCGCCAA GGGTTTTGCG GTGGATTGTG CGATCGAGGT GTTGCGCACC TTCGCGGTCG AGCGCGCGAT CGTCAATGCC GGCGGCGACT TGCGCCACCA CGGCGCCTGG CCGATGTCGG TGCAGGTGCG TGACCCGCAA AACGCTGCCC GTGTTGCAAC GTCTGTGCTG CTCGACAACG CGGCACTGGC GAGTTCGACG GCTGCCGGTT TTGGCGCAGT CGCCGAAAGT GCATCCCGCA TCCGCGATGC TCGCGGCAGG TTGCTGCCAC CGCTTGCCGG TGCAACGGTG CAGGCACCCA CCTGCATGCT GGCCGACGCG CTGACCAAAG TCGTGCTTGC CACTGGCGAT GCAGCGCATC CGCTGTTGAG ACGGTACGGC GGGGCTGTGG TCGTATACTC GCGAGCTTAG
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Protein sequence | MRATCRRARP LLGTLVDVQA EGPEAEAAVA AAFDEMAAVH ALLTFHAKDS ELQAINRAAP GERLIADTRT LAVLRLAAEL HIVSERAFDC RVGPLDLLAD RRFPISFDGD IVVKETCAYM DLGGIAKGFA VDCAIEVLRT FAVERAIVNA GGDLRHHGAW PMSVQVRDPQ NAARVATSVL LDNAALASST AAGFGAVAES ASRIRDARGR LLPPLAGATV QAPTCMLADA LTKVVLATGD AAHPLLRRYG GAVVVYSRA
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