Gene Rpic_1886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1886 
Symbol 
ID6288378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1986106 
End bp1986885 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content65% 
IMG OID642625450 
ProductApbE family lipoprotein 
Protein accessionYP_001899454 
Protein GI187928967 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00789462 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.699766 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCGA CTTGCCGGCG CGCGCGCCCG TTGCTCGGCA CCCTGGTCGA CGTGCAGGCT 
GAAGGGCCGG AGGCGGAAGC CGCCGTGGCG GCCGCGTTCG ACGAGATGGC CGCTGTGCAC
GCATTGCTCA CTTTTCATGC GAAGGACAGT GAACTGCAGG CCATCAATCG CGCGGCGCCG
GGTGAGAGGC TCATTGCAGA TACTCGGACC CTTGCCGTTC TGCGCCTTGC GGCTGAACTG
CATATCGTGT CGGAGCGCGC ATTCGATTGC CGTGTCGGCC CCCTCGACTT GCTCGCAGAC
AGGCGGTTTC CCATTTCCTT CGACGGTGAC ATCGTCGTCA AAGAAACCTG CGCATACATG
GATCTTGGAG GCATCGCCAA GGGTTTTGCG GTGGATTGTG CGATCGAGGT GTTGCGCACC
TTCGCGGTCG AGCGCGCGAT CGTCAATGCC GGCGGCGACT TGCGCCACCA CGGCGCCTGG
CCGATGTCGG TGCAGGTGCG TGACCCGCAA AACGCTGCCC GTGTTGCAAC GTCTGTGCTG
CTCGACAACG CGGCACTGGC GAGTTCGACG GCTGCCGGTT TTGGCGCAGT CGCCGAAAGT
GCATCCCGCA TCCGCGATGC TCGCGGCAGG TTGCTGCCAC CGCTTGCCGG TGCAACGGTG
CAGGCACCCA CCTGCATGCT GGCCGACGCG CTGACCAAAG TCGTGCTTGC CACTGGCGAT
GCAGCGCATC CGCTGTTGAG ACGGTACGGC GGGGCTGTGG TCGTATACTC GCGAGCTTAG
 
Protein sequence
MRATCRRARP LLGTLVDVQA EGPEAEAAVA AAFDEMAAVH ALLTFHAKDS ELQAINRAAP 
GERLIADTRT LAVLRLAAEL HIVSERAFDC RVGPLDLLAD RRFPISFDGD IVVKETCAYM
DLGGIAKGFA VDCAIEVLRT FAVERAIVNA GGDLRHHGAW PMSVQVRDPQ NAARVATSVL
LDNAALASST AAGFGAVAES ASRIRDARGR LLPPLAGATV QAPTCMLADA LTKVVLATGD
AAHPLLRRYG GAVVVYSRA