Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1647 |
Symbol | |
ID | 6287246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 1732671 |
End bp | 1734221 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642625211 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001899217 |
Protein GI | 187928730 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0515736 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGAA CCATCTTTGC GCGCATTGCA GCCAGTCTGG TGTTGGCGAG CCTTGGCATG GGCGCCACCT ACTACCTTGG CGTGAGGCAG GGACAGCGGA GCGCGCCCAC GCAGGCGGCA GCATCTGCCC AAGCCGCCGA TGCCCCGCTC AAAGCGGGCG ACATCGATCC CAAGACGGGC AAGCGGATTC TCTATTGGCA AGACCCCATG GCACCTGGCC AGCGTTTCGA CAAACCAGGC AAATCACCTT TCATGGACAT GCCGCTTGCC CCCGTCTACG AGAATGGCGC CGGCGGGAGC GCCGCCGTCA CGGTTGATGG CCGTGTGGCA CAGAATCTTG CTGTGCGCAC GGCTGAGGTC AAGACCGGCC GGCTGGACGC CATGCTGGAA GTGCCCGGCA ATATCGCCAT CAACGAGCGC GGCATCGAGA TCATTCAAGC GCGCGCCGCC GGCTTTGTCG AACGGGCGTA CGCGAAAACC ACGTTAGACC CGGTCAAGCG CGGGCAACCG CTGATCGTCG TCTACGCGCC GGAATGGGTC GCCGCACAAG AGGAGTACCT GGCCGTTTCG CGTACGGCCA ACGCCCTGCA GGGGGACCTG CGCAGCGCAG CGTTGCTGCG CATGCGCCAG GCCGGCATGA CGGAGGCGCA GATCCGGCTG GTCGAATCCA CCGGCAAGCC ACAGCCACGG CTGGCGATTT CCAGCGACAT CGATGGCGTC ATCACCGAGG TCGGGGTCCG GGACGGCATG GCTGTCGCAC CCGGCATGAC GCTCTTCAAG ATTGCCGACT TGTCCACCGT GTGGGTCTTG GCGGAGATTC CCGAGAGCCA AGCATCGGCC ATCCGCCCGG GCCAGGCGGT GACGGCCACG GCGACGGCAA TCGCTGGACA CGCGCTGACC GGCAAGGTGG ATGCCATCCT GCCCGACGTC AATGCCAATA CGCGAACCGT CAAGGTGCGC GTCGAACTCC AGAACCGGGA CCGCCGCCTC TTGCCCGGCA TGTTCGCCAA CGTGCGGTTT GGCGCGCAAG CCGGCCCGGA CAAGCTGCTG GTCCCCACGG AGGCGTTGAT TCGCACCGGT ACGCGCACGA TCGTCATGGT GGACGCCGGC AATGGCGGCT TCAACCCCAT CGAAGTCAAG ACCGGAGCCG AAGCCAATGG GCAGACCGAA GTGACCGACG GTTTGAGCGC GGGACAGAAG GTGGTGGTTT CCGGGCAGTT CCTGATTGAT TCGGAAGCTA GCCTGCGCGG CACCGCCCAA CGCATGGCAT CGCCACCTGC GGCCTCCGCG CCCGCAGCGG CCGCCATCGA GCATGAAGGC GTCGGCCGCA TTGAGGCTGT CACCAGCGAA GGCCTGACGA TCTCACATGG CGCGATTCCG TCCGCGCACT GGAGCGCGAT GACAATGGAT TTTGCCGCAC CGCCCTCCGG CCTGCCAAAG CGCTTCAAGC CTGGGGACCG TGTGCGCTTC CGGTTCCAAC TGCATGACGA TGGCATGGCA GTCCTGTCCT CGGTCGAGCC GGCCGGCGCG GATCAGGGGG GCAAGCCATG A
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Protein sequence | MNRTIFARIA ASLVLASLGM GATYYLGVRQ GQRSAPTQAA ASAQAADAPL KAGDIDPKTG KRILYWQDPM APGQRFDKPG KSPFMDMPLA PVYENGAGGS AAVTVDGRVA QNLAVRTAEV KTGRLDAMLE VPGNIAINER GIEIIQARAA GFVERAYAKT TLDPVKRGQP LIVVYAPEWV AAQEEYLAVS RTANALQGDL RSAALLRMRQ AGMTEAQIRL VESTGKPQPR LAISSDIDGV ITEVGVRDGM AVAPGMTLFK IADLSTVWVL AEIPESQASA IRPGQAVTAT ATAIAGHALT GKVDAILPDV NANTRTVKVR VELQNRDRRL LPGMFANVRF GAQAGPDKLL VPTEALIRTG TRTIVMVDAG NGGFNPIEVK TGAEANGQTE VTDGLSAGQK VVVSGQFLID SEASLRGTAQ RMASPPAASA PAAAAIEHEG VGRIEAVTSE GLTISHGAIP SAHWSAMTMD FAAPPSGLPK RFKPGDRVRF RFQLHDDGMA VLSSVEPAGA DQGGKP
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