Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1253 |
Symbol | |
ID | 6289447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 1343018 |
End bp | 1344571 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642624823 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_001898829 |
Protein GI | 187928342 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.245274 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.49371 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCAATC GCTTTGCTTT CAGCCCGCGC GCAGCCATGG TTGCCAGCGG CCTGGCCCTG GCGGCATTCA CCATGCCGGC CTTTGCCGCC AAGGACGCCG TGATGGCGGT CTACTCGACC TTCACCACGA TGGACCCGTA CGACGCCAAC GACACGCTGT CGTTCAGCGC GGCCAAGTCG TTCTATCAAG GCCTGTTCGG CTTCGACAAG GACATGAAGC TGGTCAACGT GCTGTGCGAC AGCTACGAGG TCAGCAAGGA CGGCCTCGTC TACACGTTCA AGCTGAAGAA GGGCGTGAAG TTCCACGATG GCACCACGTT TGATGCCAAC GCCGTCAAGG CCAACCTGGA CCGCGTGACC GACCCGGCCA ACAAGCTCAA GCGTTTCGTG CTGTTCAACC GCGTGGCCAA GACCGAAGTT GTTGACCCGA CCACCGCCCG CGTGACGCTC AAGGAGCCGT TCTCGCCGTT CATCAACGTG CTGGCCCATC CGTCGGCGGC GATGATCTCG CCCACGGCGC TCAAGAAGTA CGGCAAGGAC ATCGCGTTCC ACCCGGTCGG CACCGGGCCG TTCGAATTTG TCGAGTGGAA GCAGACCGAC TACCTGAAGG GCAAGAAATT CGACGGCTAC TGGAAACACG GCCTGCCGAA GATCGACACC ATCACCTGGA AGCCGGTGGT CGACAACAAC ACGCGCGCCA CCATCATGCA GACGGGCGAG GCCGACTTTG CGTTCACGAT TCCGTTCGAG CAGGCTGCCG TCCTCAAGAG CAGCCCCAAG GTTGACCTGA TTGCCGCGCC GTCGATCATC CAGCGCTATG TCAGCTTCAA CACCAACGTG AAGCCGTTCG ACAACCCCAA GGTGCGTCAG GCGATCAACT ATGCGATCAA CAAGGATGCG CTGACCAAGG TGGCGTTCGC GGGTTACGCC GTGCCGGCCG AAGGCGTGGT GCCGCCGGGC GTTGACTACG CGGTCAAGCT GGGCCCGTGG CCGTACAACC CGGCCAAGGC GAAAGAGCTG CTGAAGGAAG CGGGTTACCC GAACGGCTTT GAGACGCAAC TGTGGTCGGC CTATAACCAC ACGACGGCGC AGAAGATCAT CCAGTTCGTG CAGCAGCAAC TGGCCCAGGT CGGCATCAAG ACGTCGGTGC TGGCGCTGGA AGCCGGCCAG CGCGTCGAGC GTGTGGAAAG CGTGCCCAAG CCGGAAGACG CCGGCGTGCG CATGTATTAC GCAGGCTGGT CGTCGTCGAC GGGTGAGTCG GATTGGGCGC TGCGTCCGTT GCTGGCATCG GAAGCCATGC CGCCCAAGTC GTTCAACACC GCATACTACA AGAACGAGCA GGTGGATGCC GACATCGCGG GCGCACTGCG CACGACCGAT CGCGCTGAGA AGTCGAAGCT CTACACCGAC GCGCAGAAGC GCATCTGGGA AGACGCACCG TGGGCCTTCC TGGTGACGGA GAAGATCGTC TACGCGCGCT CGAAGCGTCT GTCGGGTGCC TACGTCGCGC CGGACGGTTC GTTCAGCTTC GACGACATCG ACGTCAAGCA ATAA
|
Protein sequence | MFNRFAFSPR AAMVASGLAL AAFTMPAFAA KDAVMAVYST FTTMDPYDAN DTLSFSAAKS FYQGLFGFDK DMKLVNVLCD SYEVSKDGLV YTFKLKKGVK FHDGTTFDAN AVKANLDRVT DPANKLKRFV LFNRVAKTEV VDPTTARVTL KEPFSPFINV LAHPSAAMIS PTALKKYGKD IAFHPVGTGP FEFVEWKQTD YLKGKKFDGY WKHGLPKIDT ITWKPVVDNN TRATIMQTGE ADFAFTIPFE QAAVLKSSPK VDLIAAPSII QRYVSFNTNV KPFDNPKVRQ AINYAINKDA LTKVAFAGYA VPAEGVVPPG VDYAVKLGPW PYNPAKAKEL LKEAGYPNGF ETQLWSAYNH TTAQKIIQFV QQQLAQVGIK TSVLALEAGQ RVERVESVPK PEDAGVRMYY AGWSSSTGES DWALRPLLAS EAMPPKSFNT AYYKNEQVDA DIAGALRTTD RAEKSKLYTD AQKRIWEDAP WAFLVTEKIV YARSKRLSGA YVAPDGSFSF DDIDVKQ
|
| |