Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1228 |
Symbol | |
ID | 6287195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 1316080 |
End bp | 1317807 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642624798 |
Product | thiamine pyrophosphate protein |
Protein accession | YP_001898804 |
Protein GI | 187928317 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.299499 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.940009 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGACAC CAGCCGCACG CCCCGCCAGC CTTGTCGTTG AGCCCCGCCA CGGCGGCCAG ATTCTTGTTG ATGCACTGCT GGCCCATGGC GTCGACATGG CCTTCGGCGT GCCCGGCGAG AGCTACCTGT CTGTGCTCGA AGGCTTTTAT CAGCGCCGCG ACCGCGCACG CTTCATCGTC TGCCGGCAAG AGGGCGGTGC GGCCAACATG GCGGATGCGT ACGGCAAGCT CACCGGCCGC CCCGGCATCG TCTTCTGCAC GCGCGGGCCG GGCGCCACCA ACGCCAGCAT TGGCGTACAC ACTGCGTTTC AGGACTCCAC GCCGCTGATC CTGTTCATCG GCCAGGTCGG CCGCGATTTC GTCGACCGGG AAGCGTTTCA GGAAATCGAC TACCGCCGCA TGTTCGGCCA GATGGCCAAG TGGGTCGCGC AGATCGATAG CGTCGAACGC ATCCCCGAAT ACATCGCACG CGCCTTCCAG ACTGCCACCG CCGGCCGCCC CGGCCCGGTT GTGCTGGCGC TGCCCGAAGA CATGCTGACC GACGTCGCCA CCGTGGCTGA TGTGCCGCCC GAGGTGGCAA CGAAAGCCCG CGCGATGGCG TGGCCCAGCC CGCATGATCT TGCCCGGCTG AAGACGCTGC TGCAGGACGC CGAGCGCCCG ATGCTGCTGC TGGGCGGTTC CGGCTGGACG CCGCAAGCCG CCGCCCGCAT GCAGGCCTTT GCCGAGCGCT GGAATCTGCC CGCAGGCTGC GTGTTCCGTC GGCAAGACCT GTTCGACAAC CGCCACCCCA ATTACGCCGG TGATGTCGGT ATCGCCATCA ACCCGAAGCT CGCGGCGCGC GTGAAAGACG CCGACGTCGT GCTTGCCATC GGCACACGCC TGGGCGAAAT GACGACCTCG GGCTACACGC TCTTCGATGT GCCGCGCCCG AAGCAGACGC TCGTCCACGT GCACGCCGGT GCGGAAGAGT TGGGACGCGT CTACCAGGCT GATCTGATGA TCCACGCGTC GATGCCCGCG ATTGCCGAAG CGCTGGATGG CGTGTCGCCT GATGCGCCGC CGCGTTGGTC CGCCTGGACA GAAGCCGCCA ATGCCGATTA CCGCGCCAAC ATCGTGCCAC CGCCGTTTGG CGGCAAGGGC ATCGACATGG CCCGCGCCAT GCAATGGCTG CGCGAGCGCC TGCCTCGCCA CAGCATCTTG ACCAACGGCG CAGGCAACTA CGCCACGTGG CTGCATCGCT TCTATCAATA CGGTGCGCTG GCGGCAGGCT CGCGAACGCA ACTCGCCCCC ACGAGCGGGG CGATGGGCTA TGGCGCCCCC GCTGCGGTGG CCGCCAAGAT CGTCAGCCCC GACACGCCCG TCATCTGCAT GGCCGGTGAC GGTTGCTTCC TGATGAACGG CCAGGAACTG GCGACCGCCA TGCAGTACAA CGCGCCGGTG ATCTTCATCG TGGTCAACAA CGGCATGTAC GGCACCATCC GCATGCACCA GGAACGCGAG TACCCCGAGC ACGTGAGCGG TACCGAGCTG CGCAACCCGG ACTTCGCCGC ATTGGCCAGA GCCTACGGCG CCGAAGGGCA TACGGTGCGC TCGCTTGAAG GCTTCCAGTC TGCGGTGGAG ACGGCACTTG CCGCGCTTGT GGCGAGCATC ATCGAAGTGC AGACCGATCC GAACATCATC AGCCCACGCG CGACGATCGA TTCGTTGCAT GCACAGTCAC GCAGTTGA
|
Protein sequence | METPAARPAS LVVEPRHGGQ ILVDALLAHG VDMAFGVPGE SYLSVLEGFY QRRDRARFIV CRQEGGAANM ADAYGKLTGR PGIVFCTRGP GATNASIGVH TAFQDSTPLI LFIGQVGRDF VDREAFQEID YRRMFGQMAK WVAQIDSVER IPEYIARAFQ TATAGRPGPV VLALPEDMLT DVATVADVPP EVATKARAMA WPSPHDLARL KTLLQDAERP MLLLGGSGWT PQAAARMQAF AERWNLPAGC VFRRQDLFDN RHPNYAGDVG IAINPKLAAR VKDADVVLAI GTRLGEMTTS GYTLFDVPRP KQTLVHVHAG AEELGRVYQA DLMIHASMPA IAEALDGVSP DAPPRWSAWT EAANADYRAN IVPPPFGGKG IDMARAMQWL RERLPRHSIL TNGAGNYATW LHRFYQYGAL AAGSRTQLAP TSGAMGYGAP AAVAAKIVSP DTPVICMAGD GCFLMNGQEL ATAMQYNAPV IFIVVNNGMY GTIRMHQERE YPEHVSGTEL RNPDFAALAR AYGAEGHTVR SLEGFQSAVE TALAALVASI IEVQTDPNII SPRATIDSLH AQSRS
|
| |