Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1124 |
Symbol | |
ID | 6287645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 1200898 |
End bp | 1202427 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642624697 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_001898704 |
Protein GI | 187928217 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.405736 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCT TGAACTCCGC CCCTCAGGCA CCTTCGCCCC TAAGCCGCGC TGGCAACACG CGCGCGCAAT GGCCGGCACG CCTGGGCGTG GCGCTTTCCG CCGTGACGCT GGCCGTGCTG GCTGGTTGCG CGAACCTCGG CAATTCGCAT AGCACGCAGA CGCTGACAAC ACCGGGGCAG CTGGCGAGCG CGCAATCGTT GCCCTCAGAA GGCGGCCAGT GGCCTTCGCA GAACTGGGTC GATCAGTTCG ACGATCCGCA ATTGCGCGCG CTGGTGGATG AGGCCATCAA GGACAACCCG AACCTGCAAG TCGCCTTTGC CCGCGTCCGA GCTTCGCGTG CGATGGCCGA TGTCGTGCGC GGCAATCTGT ATCCGAGCGT CGGGCTCGAT GCCGACATGA CGCGCCAGCG TCTATCGGAA TACGACATGT TTGAAGGCAC GCCGCTGGCC GGCCGCTGGT TCACAGAATC GAAGATCCAG CTAGGCGTGA GCTACGACCT GGATTTCTGG GGCAAGAATC GCTCCGCATT GGAAGCGGCG CTGTCCGACG ACAAGTCGAT CGAAGCGGAA AGCCAGGCTT CGCGACTGAT GCTGTCGACC ACGGTGGCAC GCACCTACGC CAAGCTGGCT GCACTCTATG CGCAGCGCGA CGTGGCTGAA CGGTCCATCG CGCAGCGCAA GGATTTGACC AACCTTGCCG GCCAACGCTT GCGTGCCGGC CTGGATACGC AAGTCGAGAC CACGCAGGCG CGCGCCAACG TGGCTGCCGC GCAGACGGAA CTGGAGCAGG TTGACGAGCA GATCACGCTG GCACGCAACC AGCTGGCTGC GCTACTGGGC AAGGGCCCGG ACCGCGGCTT GACGATTGCG CGCCCGACGC TGCTCGCACA AGCCACGCCC AAGCTGCCGA ACAATCTGAC CATCGATCTG ATCGGCCGCC GCCCGGATCT CGTGGCTGCA CGCTGGCGAG TGGAAGCAGC GTCGAAGGAC ATCGACGTGG CCAAGGCACA GTTCCTGCCG GATATCAGCC TGACTGCATT CCTGGGGCTG GCTTCGATCG CGCCGGAAAA CCTGCTGCTC GGCGCATCGC GTCAGCTCGG CATCGGTCCG GCGCTCAAGC TGCCGATCTT CGAGGGCGGC AAGCTGCGCG CCAACCTGCG GGGCAAGTAC GCCAACTATG ACGCCGCCGT CGCCAGCTAC AACCAGACGC TGACCGAAGC CCTGCACGAC ACCGCTGACC AGATCACCAC GCTGCACAGC ATCGATTCGC AGATCACGAT CCAGCGCACG GCCCTAAGCG AAGCTGAGCG TGCCTACAGC CTGGCCCGCA CGCGCTACAG CGCCGGCCTC GGCACGCAAC TGGTCGTGCT GAACGCCGAG ACGACCGTGC TGCAGCAACG CAAGCTCGCG ACCGACCTGC AGGCACGCCG ACTCGACGCG CAGATGGCCC TCATCAAGGC CCTCGGCGGC GGCTATACGG CAGAAGACCT GCCGGGCGCC AAGCCTGAGG CCGCCGCCTC GCATGGCTGA
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Protein sequence | MNALNSAPQA PSPLSRAGNT RAQWPARLGV ALSAVTLAVL AGCANLGNSH STQTLTTPGQ LASAQSLPSE GGQWPSQNWV DQFDDPQLRA LVDEAIKDNP NLQVAFARVR ASRAMADVVR GNLYPSVGLD ADMTRQRLSE YDMFEGTPLA GRWFTESKIQ LGVSYDLDFW GKNRSALEAA LSDDKSIEAE SQASRLMLST TVARTYAKLA ALYAQRDVAE RSIAQRKDLT NLAGQRLRAG LDTQVETTQA RANVAAAQTE LEQVDEQITL ARNQLAALLG KGPDRGLTIA RPTLLAQATP KLPNNLTIDL IGRRPDLVAA RWRVEAASKD IDVAKAQFLP DISLTAFLGL ASIAPENLLL GASRQLGIGP ALKLPIFEGG KLRANLRGKY ANYDAAVASY NQTLTEALHD TADQITTLHS IDSQITIQRT ALSEAERAYS LARTRYSAGL GTQLVVLNAE TTVLQQRKLA TDLQARRLDA QMALIKALGG GYTAEDLPGA KPEAAASHG
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