Gene Rpic_1121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1121 
Symbol 
ID6286670 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1197119 
End bp1197946 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content64% 
IMG OID642624694 
ProductIntegrase catalytic region 
Protein accessionYP_001898701 
Protein GI187928214 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.516985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.319889 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGCAGGG CCTGCCGCTA CATTGGCATC AGCCGCCAAG CGTACTACAA ACGCCAGCAA 
AGCGAGACAC GGCAAATCGC GCGTGAGGCC AAGGTCTGTG CGTTGGTCAA CCACTTACGG
CTGCGCCAGC CGCGCTTGGG TACGCGCAAG CTCCAGCACG TGCTGCGCAC GCCGCTGGCC
GAGGCAGGCA TCCAGGTTGG CCGGGATCGC CTGTTCGATA TCCTGCGTGC AGCCCGGCTG
CTGGTCGTGC CGCAGCGGGC GTATCACAAG ACCACACACA GTCATCATCG CTTCCGGCGC
CATCCCAATC TGCTCAAGGA CGGCCCGAAC CAGGTCATCC CCACCGGGCC GGAGCAGGTC
TGGGTGGCCG ACATTACCTA TCTGCCGACC GCCCAGCGCT GTGCGTACCT GAGTCTGGTG
ACTGACGCCT ACTCGCGCAA GATCGTGGGC TACCGCGTGC ATGACAGCCT GCATGCCGAG
TCGGTCGCCC AGGCGTTGAA GATGGCGCTG AAGACGCGCC ATACGCGACA GCCTCTGGTT
CATCACTCGG ATCGGGGCAT CCAATACTGT TCAGCCGAGT ACCAGCGCAT CCATCAGCGG
CACGGCATCA CGTGCTCCAT GACCGATGGC TACGACTGCT ACCAGAATGC CCTGGCCGAA
CGGGTCAACG GCATCCTCAA AGGGGAGTTG CTGCTCAAGC GCCCCGCCGA CCTAGAGCAG
GCCGCACGCA TGGTGGCGCA GGCCGTGCAT ATCTACAACC ACGAACGGCC TCATCTGGCC
TTGAAATACA AAACGCCCGA TGCGGTGCAT CGGGCGCTCG GAGACTGA
 
Protein sequence
MGRACRYIGI SRQAYYKRQQ SETRQIAREA KVCALVNHLR LRQPRLGTRK LQHVLRTPLA 
EAGIQVGRDR LFDILRAARL LVVPQRAYHK TTHSHHRFRR HPNLLKDGPN QVIPTGPEQV
WVADITYLPT AQRCAYLSLV TDAYSRKIVG YRVHDSLHAE SVAQALKMAL KTRHTRQPLV
HHSDRGIQYC SAEYQRIHQR HGITCSMTDG YDCYQNALAE RVNGILKGEL LLKRPADLEQ
AARMVAQAVH IYNHERPHLA LKYKTPDAVH RALGD